Experiment: monoculture; Experiment C, time point 6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3329 and HP15_3330 are separated by 169 nucleotides HP15_3330 and HP15_3331 are separated by 28 nucleotides
HP15_3329: HP15_3329 - NAD-dependent aldehyde dehydrogenase, at 3,488,828 to 3,490,273
_3329
HP15_3330: HP15_3330 - conserved hypothetical protein, at 3,490,443 to 3,491,081
_3330
HP15_3331: HP15_3331 - oxidoreductase, GMC family, at 3,491,110 to 3,492,699
_3331
Position (kb)
3490
3491
3492 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3489.495 kb on + strand, within HP15_3329 at 3489.495 kb on + strand, within HP15_3329 at 3489.503 kb on - strand, within HP15_3329 at 3489.516 kb on - strand, within HP15_3329 at 3489.529 kb on - strand, within HP15_3329 at 3489.593 kb on + strand, within HP15_3329 at 3489.615 kb on + strand, within HP15_3329 at 3489.727 kb on - strand, within HP15_3329 at 3489.799 kb on + strand, within HP15_3329 at 3489.799 kb on + strand, within HP15_3329 at 3489.799 kb on + strand, within HP15_3329 at 3489.976 kb on + strand, within HP15_3329 at 3490.018 kb on + strand, within HP15_3329 at 3490.042 kb on + strand, within HP15_3329 at 3490.042 kb on + strand, within HP15_3329 at 3490.044 kb on - strand, within HP15_3329 at 3490.050 kb on - strand, within HP15_3329 at 3490.050 kb on - strand, within HP15_3329 at 3490.050 kb on - strand, within HP15_3329 at 3490.065 kb on - strand, within HP15_3329 at 3490.158 kb on - strand at 3490.233 kb on - strand at 3490.320 kb on + strand at 3490.365 kb on - strand at 3490.438 kb on + strand at 3490.586 kb on + strand, within HP15_3330 at 3490.627 kb on + strand, within HP15_3330 at 3490.670 kb on + strand, within HP15_3330 at 3490.678 kb on - strand, within HP15_3330 at 3490.826 kb on + strand, within HP15_3330 at 3490.855 kb on - strand, within HP15_3330 at 3490.857 kb on + strand, within HP15_3330 at 3490.870 kb on - strand, within HP15_3330 at 3490.941 kb on + strand, within HP15_3330 at 3490.965 kb on - strand, within HP15_3330 at 3491.027 kb on + strand at 3491.035 kb on - strand at 3491.035 kb on - strand at 3491.035 kb on - strand at 3491.248 kb on - strand at 3491.362 kb on + strand, within HP15_3331 at 3491.370 kb on - strand, within HP15_3331 at 3491.385 kb on - strand, within HP15_3331 at 3491.440 kb on - strand, within HP15_3331 at 3491.697 kb on - strand, within HP15_3331 at 3491.704 kb on + strand, within HP15_3331 at 3491.932 kb on - strand, within HP15_3331
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 6 remove 3,489,495 + HP15_3329 0.46 -0.1 3,489,495 + HP15_3329 0.46 +2.0 3,489,503 - HP15_3329 0.47 +2.4 3,489,516 - HP15_3329 0.48 -1.5 3,489,529 - HP15_3329 0.48 -1.2 3,489,593 + HP15_3329 0.53 -1.9 3,489,615 + HP15_3329 0.54 -1.0 3,489,727 - HP15_3329 0.62 +1.4 3,489,799 + HP15_3329 0.67 -3.0 3,489,799 + HP15_3329 0.67 +0.5 3,489,799 + HP15_3329 0.67 -1.1 3,489,976 + HP15_3329 0.79 -2.7 3,490,018 + HP15_3329 0.82 +1.4 3,490,042 + HP15_3329 0.84 -0.9 3,490,042 + HP15_3329 0.84 +0.4 3,490,044 - HP15_3329 0.84 +3.3 3,490,050 - HP15_3329 0.85 -1.9 3,490,050 - HP15_3329 0.85 -0.0 3,490,050 - HP15_3329 0.85 +1.2 3,490,065 - HP15_3329 0.86 -0.6 3,490,158 - +1.4 3,490,233 - +2.4 3,490,320 + -1.1 3,490,365 - +0.5 3,490,438 + -2.3 3,490,586 + HP15_3330 0.22 +0.6 3,490,627 + HP15_3330 0.29 -0.4 3,490,670 + HP15_3330 0.36 -0.1 3,490,678 - HP15_3330 0.37 -0.2 3,490,826 + HP15_3330 0.60 -0.1 3,490,855 - HP15_3330 0.64 +0.2 3,490,857 + HP15_3330 0.65 +1.8 3,490,870 - HP15_3330 0.67 -0.3 3,490,941 + HP15_3330 0.78 +0.3 3,490,965 - HP15_3330 0.82 -0.6 3,491,027 + -0.3 3,491,035 - -0.6 3,491,035 - -1.0 3,491,035 - +0.7 3,491,248 - -0.1 3,491,362 + HP15_3331 0.16 -0.4 3,491,370 - HP15_3331 0.16 -0.2 3,491,385 - HP15_3331 0.17 +1.1 3,491,440 - HP15_3331 0.21 +2.0 3,491,697 - HP15_3331 0.37 -0.0 3,491,704 + HP15_3331 0.37 +1.4 3,491,932 - HP15_3331 0.52 -0.1
Or see this region's nucleotide sequence