Strain Fitness in Marinobacter adhaerens HP15 around HP15_3308

Experiment: monoculture; Experiment C, time point 6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3306 and HP15_3307 are separated by 82 nucleotidesHP15_3307 and HP15_3308 are separated by 265 nucleotidesHP15_3308 and HP15_3309 are separated by 247 nucleotides HP15_3306: HP15_3306 - molybdenum ABC transporter, ATP-binding protein, at 3,463,310 to 3,464,392 _3306 HP15_3307: HP15_3307 - transcriptional regulator, Crp/Fnr family, at 3,464,475 to 3,465,116 _3307 HP15_3308: HP15_3308 - OsmC family protein, at 3,465,382 to 3,465,804 _3308 HP15_3309: HP15_3309 - S-adenosylmethionine decarboxylase proenzyme, at 3,466,052 to 3,466,846 _3309 Position (kb) 3465 3466Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3464.386 kb on - strandat 3464.414 kb on - strandat 3464.465 kb on - strandat 3464.551 kb on + strand, within HP15_3307at 3464.582 kb on - strand, within HP15_3307at 3464.666 kb on + strand, within HP15_3307at 3464.733 kb on - strand, within HP15_3307at 3464.789 kb on - strand, within HP15_3307at 3464.809 kb on - strand, within HP15_3307at 3464.817 kb on + strand, within HP15_3307at 3464.836 kb on + strand, within HP15_3307at 3464.844 kb on - strand, within HP15_3307at 3464.844 kb on - strand, within HP15_3307at 3464.844 kb on - strand, within HP15_3307at 3464.844 kb on - strand, within HP15_3307at 3464.931 kb on + strand, within HP15_3307at 3464.980 kb on + strand, within HP15_3307at 3464.982 kb on + strand, within HP15_3307at 3465.270 kb on - strandat 3465.391 kb on + strandat 3465.399 kb on - strandat 3465.487 kb on - strand, within HP15_3308at 3465.613 kb on - strand, within HP15_3308at 3465.679 kb on + strand, within HP15_3308at 3465.789 kb on + strandat 3465.798 kb on + strandat 3465.806 kb on - strandat 3465.806 kb on - strandat 3465.986 kb on + strandat 3466.011 kb on + strandat 3466.011 kb on + strandat 3466.011 kb on + strandat 3466.121 kb on - strandat 3466.137 kb on + strand, within HP15_3309at 3466.187 kb on + strand, within HP15_3309at 3466.200 kb on + strand, within HP15_3309at 3466.241 kb on - strand, within HP15_3309at 3466.256 kb on + strand, within HP15_3309at 3466.318 kb on - strand, within HP15_3309at 3466.411 kb on - strand, within HP15_3309at 3466.473 kb on + strand, within HP15_3309at 3466.473 kb on + strand, within HP15_3309at 3466.481 kb on - strand, within HP15_3309at 3466.599 kb on - strand, within HP15_3309at 3466.670 kb on - strand, within HP15_3309at 3466.701 kb on - strand, within HP15_3309

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 6
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3,464,386 - -0.8
3,464,414 - +0.3
3,464,465 - -0.7
3,464,551 + HP15_3307 0.12 -0.1
3,464,582 - HP15_3307 0.17 +0.3
3,464,666 + HP15_3307 0.30 -0.9
3,464,733 - HP15_3307 0.40 +1.6
3,464,789 - HP15_3307 0.49 -0.3
3,464,809 - HP15_3307 0.52 -0.2
3,464,817 + HP15_3307 0.53 +0.3
3,464,836 + HP15_3307 0.56 +1.5
3,464,844 - HP15_3307 0.57 +0.1
3,464,844 - HP15_3307 0.57 -1.6
3,464,844 - HP15_3307 0.57 +0.7
3,464,844 - HP15_3307 0.57 -0.0
3,464,931 + HP15_3307 0.71 +0.1
3,464,980 + HP15_3307 0.79 +1.7
3,464,982 + HP15_3307 0.79 +2.0
3,465,270 - -0.8
3,465,391 + +1.5
3,465,399 - +0.8
3,465,487 - HP15_3308 0.25 +2.8
3,465,613 - HP15_3308 0.55 +1.1
3,465,679 + HP15_3308 0.70 -1.4
3,465,789 + +0.2
3,465,798 + -1.3
3,465,806 - +0.7
3,465,806 - +0.2
3,465,986 + +0.5
3,466,011 + +0.6
3,466,011 + -0.1
3,466,011 + +0.8
3,466,121 - -0.2
3,466,137 + HP15_3309 0.11 +1.5
3,466,187 + HP15_3309 0.17 +1.9
3,466,200 + HP15_3309 0.19 +3.3
3,466,241 - HP15_3309 0.24 +2.1
3,466,256 + HP15_3309 0.26 -1.7
3,466,318 - HP15_3309 0.33 +0.4
3,466,411 - HP15_3309 0.45 -0.9
3,466,473 + HP15_3309 0.53 -1.1
3,466,473 + HP15_3309 0.53 -1.7
3,466,481 - HP15_3309 0.54 +1.7
3,466,599 - HP15_3309 0.69 +1.7
3,466,670 - HP15_3309 0.78 -1.3
3,466,701 - HP15_3309 0.82 -2.3

Or see this region's nucleotide sequence