Experiment: monoculture; Experiment C, time point 6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3306 and HP15_3307 are separated by 82 nucleotides HP15_3307 and HP15_3308 are separated by 265 nucleotides HP15_3308 and HP15_3309 are separated by 247 nucleotides
HP15_3306: HP15_3306 - molybdenum ABC transporter, ATP-binding protein, at 3,463,310 to 3,464,392
_3306
HP15_3307: HP15_3307 - transcriptional regulator, Crp/Fnr family, at 3,464,475 to 3,465,116
_3307
HP15_3308: HP15_3308 - OsmC family protein, at 3,465,382 to 3,465,804
_3308
HP15_3309: HP15_3309 - S-adenosylmethionine decarboxylase proenzyme, at 3,466,052 to 3,466,846
_3309
Position (kb)
3465
3466 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3464.386 kb on - strand at 3464.414 kb on - strand at 3464.465 kb on - strand at 3464.551 kb on + strand, within HP15_3307 at 3464.582 kb on - strand, within HP15_3307 at 3464.666 kb on + strand, within HP15_3307 at 3464.733 kb on - strand, within HP15_3307 at 3464.789 kb on - strand, within HP15_3307 at 3464.809 kb on - strand, within HP15_3307 at 3464.817 kb on + strand, within HP15_3307 at 3464.836 kb on + strand, within HP15_3307 at 3464.844 kb on - strand, within HP15_3307 at 3464.844 kb on - strand, within HP15_3307 at 3464.844 kb on - strand, within HP15_3307 at 3464.844 kb on - strand, within HP15_3307 at 3464.931 kb on + strand, within HP15_3307 at 3464.980 kb on + strand, within HP15_3307 at 3464.982 kb on + strand, within HP15_3307 at 3465.270 kb on - strand at 3465.391 kb on + strand at 3465.399 kb on - strand at 3465.487 kb on - strand, within HP15_3308 at 3465.613 kb on - strand, within HP15_3308 at 3465.679 kb on + strand, within HP15_3308 at 3465.789 kb on + strand at 3465.798 kb on + strand at 3465.806 kb on - strand at 3465.806 kb on - strand at 3465.986 kb on + strand at 3466.011 kb on + strand at 3466.011 kb on + strand at 3466.011 kb on + strand at 3466.121 kb on - strand at 3466.137 kb on + strand, within HP15_3309 at 3466.187 kb on + strand, within HP15_3309 at 3466.200 kb on + strand, within HP15_3309 at 3466.241 kb on - strand, within HP15_3309 at 3466.256 kb on + strand, within HP15_3309 at 3466.318 kb on - strand, within HP15_3309 at 3466.411 kb on - strand, within HP15_3309 at 3466.473 kb on + strand, within HP15_3309 at 3466.473 kb on + strand, within HP15_3309 at 3466.481 kb on - strand, within HP15_3309 at 3466.599 kb on - strand, within HP15_3309 at 3466.670 kb on - strand, within HP15_3309 at 3466.701 kb on - strand, within HP15_3309
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 6 remove 3,464,386 - -0.8 3,464,414 - +0.3 3,464,465 - -0.7 3,464,551 + HP15_3307 0.12 -0.1 3,464,582 - HP15_3307 0.17 +0.3 3,464,666 + HP15_3307 0.30 -0.9 3,464,733 - HP15_3307 0.40 +1.6 3,464,789 - HP15_3307 0.49 -0.3 3,464,809 - HP15_3307 0.52 -0.2 3,464,817 + HP15_3307 0.53 +0.3 3,464,836 + HP15_3307 0.56 +1.5 3,464,844 - HP15_3307 0.57 +0.1 3,464,844 - HP15_3307 0.57 -1.6 3,464,844 - HP15_3307 0.57 +0.7 3,464,844 - HP15_3307 0.57 -0.0 3,464,931 + HP15_3307 0.71 +0.1 3,464,980 + HP15_3307 0.79 +1.7 3,464,982 + HP15_3307 0.79 +2.0 3,465,270 - -0.8 3,465,391 + +1.5 3,465,399 - +0.8 3,465,487 - HP15_3308 0.25 +2.8 3,465,613 - HP15_3308 0.55 +1.1 3,465,679 + HP15_3308 0.70 -1.4 3,465,789 + +0.2 3,465,798 + -1.3 3,465,806 - +0.7 3,465,806 - +0.2 3,465,986 + +0.5 3,466,011 + +0.6 3,466,011 + -0.1 3,466,011 + +0.8 3,466,121 - -0.2 3,466,137 + HP15_3309 0.11 +1.5 3,466,187 + HP15_3309 0.17 +1.9 3,466,200 + HP15_3309 0.19 +3.3 3,466,241 - HP15_3309 0.24 +2.1 3,466,256 + HP15_3309 0.26 -1.7 3,466,318 - HP15_3309 0.33 +0.4 3,466,411 - HP15_3309 0.45 -0.9 3,466,473 + HP15_3309 0.53 -1.1 3,466,473 + HP15_3309 0.53 -1.7 3,466,481 - HP15_3309 0.54 +1.7 3,466,599 - HP15_3309 0.69 +1.7 3,466,670 - HP15_3309 0.78 -1.3 3,466,701 - HP15_3309 0.82 -2.3
Or see this region's nucleotide sequence