Experiment: monoculture; Experiment C, time point 6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3291 and HP15_3292 are separated by 153 nucleotides HP15_3292 and HP15_3293 are separated by 36 nucleotides HP15_3293 and HP15_3294 are separated by 91 nucleotides
HP15_3291: HP15_3291 - indole-3-glycerol phosphate synthase, at 3,449,387 to 3,450,208
_3291
HP15_3292: HP15_3292 - conserved hypothetical protein, at 3,450,362 to 3,450,973
_3292
HP15_3293: HP15_3293 - glutathione S-transferase, N-terminal domain protein, at 3,451,010 to 3,451,627
_3293
HP15_3294: HP15_3294 - hydrolase, alpha/beta fold family protein, at 3,451,719 to 3,452,453
_3294
Position (kb)
3450
3451 Strain fitness (log2 ratio)
-6
-5
-4
-3
-2
-1
0
1
2 at 3449.387 kb on - strand at 3450.000 kb on + strand, within HP15_3291 at 3450.024 kb on + strand, within HP15_3291 at 3450.024 kb on - strand, within HP15_3291 at 3450.032 kb on - strand, within HP15_3291 at 3450.223 kb on - strand at 3450.267 kb on - strand at 3450.321 kb on + strand at 3450.321 kb on + strand at 3450.321 kb on - strand at 3450.379 kb on - strand at 3450.567 kb on + strand, within HP15_3292 at 3450.621 kb on + strand, within HP15_3292 at 3450.648 kb on - strand, within HP15_3292 at 3450.704 kb on + strand, within HP15_3292 at 3450.736 kb on + strand, within HP15_3292 at 3450.814 kb on + strand, within HP15_3292 at 3450.843 kb on + strand, within HP15_3292 at 3450.861 kb on + strand, within HP15_3292 at 3450.914 kb on - strand at 3450.990 kb on - strand at 3451.016 kb on - strand at 3451.016 kb on - strand at 3451.016 kb on - strand at 3451.021 kb on - strand at 3451.021 kb on - strand at 3451.026 kb on - strand at 3451.077 kb on - strand, within HP15_3293 at 3451.089 kb on + strand, within HP15_3293 at 3451.147 kb on + strand, within HP15_3293 at 3451.157 kb on + strand, within HP15_3293 at 3451.158 kb on + strand, within HP15_3293 at 3451.165 kb on - strand, within HP15_3293 at 3451.305 kb on + strand, within HP15_3293 at 3451.383 kb on - strand, within HP15_3293 at 3451.397 kb on - strand, within HP15_3293 at 3451.507 kb on + strand, within HP15_3293 at 3451.533 kb on - strand, within HP15_3293 at 3451.659 kb on - strand at 3451.702 kb on + strand at 3451.837 kb on + strand, within HP15_3294 at 3451.881 kb on + strand, within HP15_3294
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 6 remove 3,449,387 - -6.1 3,450,000 + HP15_3291 0.75 -0.2 3,450,024 + HP15_3291 0.77 -1.1 3,450,024 - HP15_3291 0.77 -3.2 3,450,032 - HP15_3291 0.78 -2.9 3,450,223 - -1.1 3,450,267 - -0.6 3,450,321 + +0.1 3,450,321 + -0.8 3,450,321 - +1.9 3,450,379 - +0.0 3,450,567 + HP15_3292 0.33 +2.1 3,450,621 + HP15_3292 0.42 -0.4 3,450,648 - HP15_3292 0.47 +1.6 3,450,704 + HP15_3292 0.56 -0.5 3,450,736 + HP15_3292 0.61 +0.5 3,450,814 + HP15_3292 0.74 +0.5 3,450,843 + HP15_3292 0.79 +1.4 3,450,861 + HP15_3292 0.82 +1.1 3,450,914 - +0.4 3,450,990 - -0.3 3,451,016 - +1.1 3,451,016 - -1.5 3,451,016 - +1.8 3,451,021 - +0.0 3,451,021 - -0.0 3,451,026 - +1.8 3,451,077 - HP15_3293 0.11 +0.2 3,451,089 + HP15_3293 0.13 +0.1 3,451,147 + HP15_3293 0.22 +0.1 3,451,157 + HP15_3293 0.24 +2.7 3,451,158 + HP15_3293 0.24 +1.5 3,451,165 - HP15_3293 0.25 -0.2 3,451,305 + HP15_3293 0.48 -2.2 3,451,383 - HP15_3293 0.60 +0.9 3,451,397 - HP15_3293 0.63 -0.0 3,451,507 + HP15_3293 0.80 +1.6 3,451,533 - HP15_3293 0.85 +1.9 3,451,659 - -0.6 3,451,702 + +0.2 3,451,837 + HP15_3294 0.16 -1.3 3,451,881 + HP15_3294 0.22 -1.4
Or see this region's nucleotide sequence