Experiment: monoculture; Experiment C, time point 6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_331 and HP15_332 are separated by 61 nucleotides HP15_332 and HP15_333 are separated by 179 nucleotides HP15_333 and HP15_334 overlap by 17 nucleotides HP15_334 and HP15_335 are separated by 62 nucleotides HP15_335 and HP15_336 are separated by 40 nucleotides
HP15_331: HP15_331 - glutamyl-Q tRNA(Asp) synthetase, at 328,825 to 329,697
_331
HP15_332: HP15_332 - transcriptional regulator, TraR/DksA family, at 329,759 to 330,199
_332
HP15_333: HP15_333 - sugar fermentation stimulation protein-like protein, at 330,379 to 331,110
_333
HP15_334: HP15_334 - Rieske (2Fe-2S) domain protein, at 331,094 to 331,399
_334
HP15_335: HP15_335 - uncharacterized conserved protein UCP029688, pentapeptide, at 331,462 to 331,830
_335
HP15_336: HP15_336 - conserved hypothetical protein, at 331,871 to 333,457
_336
Position (kb) 330
331
332 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 329.414 kb on + strand, within HP15_331 at 329.449 kb on + strand, within HP15_331 at 329.552 kb on - strand, within HP15_331 at 329.562 kb on + strand, within HP15_331 at 329.664 kb on + strand at 330.117 kb on + strand, within HP15_332 at 330.280 kb on - strand at 330.339 kb on + strand at 330.423 kb on + strand at 330.541 kb on - strand, within HP15_333 at 330.575 kb on - strand, within HP15_333 at 330.583 kb on - strand, within HP15_333 at 330.594 kb on - strand, within HP15_333 at 330.604 kb on + strand, within HP15_333 at 330.612 kb on - strand, within HP15_333 at 330.612 kb on - strand, within HP15_333 at 330.663 kb on - strand, within HP15_333 at 330.697 kb on - strand, within HP15_333 at 330.748 kb on - strand, within HP15_333 at 330.859 kb on - strand, within HP15_333 at 330.871 kb on - strand, within HP15_333 at 330.904 kb on + strand, within HP15_333 at 330.904 kb on + strand, within HP15_333 at 331.011 kb on - strand, within HP15_333 at 331.146 kb on - strand, within HP15_334 at 331.197 kb on + strand, within HP15_334 at 331.205 kb on - strand, within HP15_334 at 331.266 kb on + strand, within HP15_334 at 331.283 kb on + strand, within HP15_334 at 331.283 kb on + strand, within HP15_334 at 331.284 kb on - strand, within HP15_334 at 331.318 kb on - strand, within HP15_334 at 331.382 kb on - strand at 331.448 kb on + strand at 331.637 kb on - strand, within HP15_335 at 331.714 kb on + strand, within HP15_335 at 331.808 kb on - strand at 331.895 kb on + strand at 331.895 kb on + strand at 331.895 kb on + strand at 331.903 kb on - strand at 331.920 kb on + strand at 331.940 kb on + strand at 331.948 kb on - strand at 331.948 kb on - strand at 331.948 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 6 remove 329,414 + HP15_331 0.67 +1.3 329,449 + HP15_331 0.71 +1.1 329,552 - HP15_331 0.83 -0.3 329,562 + HP15_331 0.84 +0.4 329,664 + -0.1 330,117 + HP15_332 0.81 +2.9 330,280 - +0.9 330,339 + -2.2 330,423 + +0.5 330,541 - HP15_333 0.22 +2.2 330,575 - HP15_333 0.27 -0.6 330,583 - HP15_333 0.28 +2.7 330,594 - HP15_333 0.29 +0.5 330,604 + HP15_333 0.31 +2.6 330,612 - HP15_333 0.32 -0.2 330,612 - HP15_333 0.32 +2.3 330,663 - HP15_333 0.39 -0.1 330,697 - HP15_333 0.43 -0.1 330,748 - HP15_333 0.50 -0.2 330,859 - HP15_333 0.66 +1.0 330,871 - HP15_333 0.67 +2.1 330,904 + HP15_333 0.72 -0.7 330,904 + HP15_333 0.72 -0.2 331,011 - HP15_333 0.86 -0.5 331,146 - HP15_334 0.17 +1.9 331,197 + HP15_334 0.34 -1.5 331,205 - HP15_334 0.36 +0.1 331,266 + HP15_334 0.56 -0.7 331,283 + HP15_334 0.62 -0.6 331,283 + HP15_334 0.62 -0.1 331,284 - HP15_334 0.62 +1.7 331,318 - HP15_334 0.73 -0.6 331,382 - +0.3 331,448 + +0.7 331,637 - HP15_335 0.47 +0.9 331,714 + HP15_335 0.68 +2.0 331,808 - -0.9 331,895 + -1.9 331,895 + -1.8 331,895 + -1.4 331,903 - -1.7 331,920 + -1.3 331,940 + +0.8 331,948 - +0.0 331,948 - +0.7 331,948 - +0.1
Or see this region's nucleotide sequence