Experiment: monoculture; Experiment C, time point 6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3201 and HP15_3202 overlap by 8 nucleotides HP15_3202 and HP15_3203 are separated by 6 nucleotides
HP15_3201: HP15_3201 - ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family, at 3,353,458 to 3,354,681
_3201
HP15_3202: HP15_3202 - 2-octaprenyl-6-methoxyphenyl hydroxylase, at 3,354,674 to 3,355,957
_3202
HP15_3203: HP15_3203 - proline aminopeptidase P II, at 3,355,964 to 3,357,283
_3203
Position (kb)
3354
3355
3356 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 3353.804 kb on + strand, within HP15_3201 at 3353.812 kb on - strand, within HP15_3201 at 3353.893 kb on + strand, within HP15_3201 at 3354.061 kb on - strand, within HP15_3201 at 3354.083 kb on + strand, within HP15_3201 at 3354.192 kb on + strand, within HP15_3201 at 3354.224 kb on + strand, within HP15_3201 at 3354.252 kb on + strand, within HP15_3201 at 3354.253 kb on - strand, within HP15_3201 at 3354.293 kb on + strand, within HP15_3201 at 3354.380 kb on - strand, within HP15_3201 at 3354.382 kb on - strand, within HP15_3201 at 3354.407 kb on + strand, within HP15_3201 at 3354.425 kb on - strand, within HP15_3201 at 3354.425 kb on - strand, within HP15_3201 at 3354.425 kb on - strand, within HP15_3201 at 3354.452 kb on - strand, within HP15_3201 at 3354.565 kb on + strand at 3354.720 kb on + strand at 3355.957 kb on + strand at 3356.052 kb on - strand at 3356.095 kb on + strand at 3356.113 kb on - strand, within HP15_3203 at 3356.123 kb on - strand, within HP15_3203 at 3356.123 kb on - strand, within HP15_3203 at 3356.217 kb on - strand, within HP15_3203 at 3356.430 kb on + strand, within HP15_3203 at 3356.517 kb on - strand, within HP15_3203 at 3356.533 kb on - strand, within HP15_3203 at 3356.540 kb on + strand, within HP15_3203 at 3356.600 kb on - strand, within HP15_3203 at 3356.606 kb on - strand, within HP15_3203 at 3356.606 kb on - strand, within HP15_3203 at 3356.606 kb on - strand, within HP15_3203 at 3356.620 kb on + strand, within HP15_3203 at 3356.628 kb on - strand, within HP15_3203 at 3356.651 kb on - strand, within HP15_3203 at 3356.651 kb on - strand, within HP15_3203 at 3356.716 kb on + strand, within HP15_3203 at 3356.860 kb on - strand, within HP15_3203 at 3356.905 kb on - strand, within HP15_3203
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 6 remove 3,353,804 + HP15_3201 0.28 -0.5 3,353,812 - HP15_3201 0.29 +0.6 3,353,893 + HP15_3201 0.36 +3.1 3,354,061 - HP15_3201 0.49 -3.1 3,354,083 + HP15_3201 0.51 +1.6 3,354,192 + HP15_3201 0.60 +2.2 3,354,224 + HP15_3201 0.63 -1.0 3,354,252 + HP15_3201 0.65 -0.3 3,354,253 - HP15_3201 0.65 -0.0 3,354,293 + HP15_3201 0.68 -0.9 3,354,380 - HP15_3201 0.75 -0.5 3,354,382 - HP15_3201 0.75 -1.1 3,354,407 + HP15_3201 0.78 +0.2 3,354,425 - HP15_3201 0.79 +0.6 3,354,425 - HP15_3201 0.79 -0.2 3,354,425 - HP15_3201 0.79 +1.0 3,354,452 - HP15_3201 0.81 -2.7 3,354,565 + -0.2 3,354,720 + -3.9 3,355,957 + -1.1 3,356,052 - -3.4 3,356,095 + -0.3 3,356,113 - HP15_3203 0.11 -3.0 3,356,123 - HP15_3203 0.12 -1.8 3,356,123 - HP15_3203 0.12 +0.2 3,356,217 - HP15_3203 0.19 +0.0 3,356,430 + HP15_3203 0.35 -0.1 3,356,517 - HP15_3203 0.42 -1.5 3,356,533 - HP15_3203 0.43 -2.5 3,356,540 + HP15_3203 0.44 -3.0 3,356,600 - HP15_3203 0.48 +0.8 3,356,606 - HP15_3203 0.49 -2.0 3,356,606 - HP15_3203 0.49 +0.9 3,356,606 - HP15_3203 0.49 -2.4 3,356,620 + HP15_3203 0.50 -2.8 3,356,628 - HP15_3203 0.50 -1.4 3,356,651 - HP15_3203 0.52 -2.4 3,356,651 - HP15_3203 0.52 -0.3 3,356,716 + HP15_3203 0.57 -1.4 3,356,860 - HP15_3203 0.68 +1.6 3,356,905 - HP15_3203 0.71 +0.7
Or see this region's nucleotide sequence