Strain Fitness in Marinobacter adhaerens HP15 around HP15_3202

Experiment: monoculture; Experiment C, time point 6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3201 and HP15_3202 overlap by 8 nucleotidesHP15_3202 and HP15_3203 are separated by 6 nucleotides HP15_3201: HP15_3201 - ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family, at 3,353,458 to 3,354,681 _3201 HP15_3202: HP15_3202 - 2-octaprenyl-6-methoxyphenyl hydroxylase, at 3,354,674 to 3,355,957 _3202 HP15_3203: HP15_3203 - proline aminopeptidase P II, at 3,355,964 to 3,357,283 _3203 Position (kb) 3354 3355 3356Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 3353.804 kb on + strand, within HP15_3201at 3353.812 kb on - strand, within HP15_3201at 3353.893 kb on + strand, within HP15_3201at 3354.061 kb on - strand, within HP15_3201at 3354.083 kb on + strand, within HP15_3201at 3354.192 kb on + strand, within HP15_3201at 3354.224 kb on + strand, within HP15_3201at 3354.252 kb on + strand, within HP15_3201at 3354.253 kb on - strand, within HP15_3201at 3354.293 kb on + strand, within HP15_3201at 3354.380 kb on - strand, within HP15_3201at 3354.382 kb on - strand, within HP15_3201at 3354.407 kb on + strand, within HP15_3201at 3354.425 kb on - strand, within HP15_3201at 3354.425 kb on - strand, within HP15_3201at 3354.425 kb on - strand, within HP15_3201at 3354.452 kb on - strand, within HP15_3201at 3354.565 kb on + strandat 3354.720 kb on + strandat 3355.957 kb on + strandat 3356.052 kb on - strandat 3356.095 kb on + strandat 3356.113 kb on - strand, within HP15_3203at 3356.123 kb on - strand, within HP15_3203at 3356.123 kb on - strand, within HP15_3203at 3356.217 kb on - strand, within HP15_3203at 3356.430 kb on + strand, within HP15_3203at 3356.517 kb on - strand, within HP15_3203at 3356.533 kb on - strand, within HP15_3203at 3356.540 kb on + strand, within HP15_3203at 3356.600 kb on - strand, within HP15_3203at 3356.606 kb on - strand, within HP15_3203at 3356.606 kb on - strand, within HP15_3203at 3356.606 kb on - strand, within HP15_3203at 3356.620 kb on + strand, within HP15_3203at 3356.628 kb on - strand, within HP15_3203at 3356.651 kb on - strand, within HP15_3203at 3356.651 kb on - strand, within HP15_3203at 3356.716 kb on + strand, within HP15_3203at 3356.860 kb on - strand, within HP15_3203at 3356.905 kb on - strand, within HP15_3203

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 6
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3,353,804 + HP15_3201 0.28 -0.5
3,353,812 - HP15_3201 0.29 +0.6
3,353,893 + HP15_3201 0.36 +3.1
3,354,061 - HP15_3201 0.49 -3.1
3,354,083 + HP15_3201 0.51 +1.6
3,354,192 + HP15_3201 0.60 +2.2
3,354,224 + HP15_3201 0.63 -1.0
3,354,252 + HP15_3201 0.65 -0.3
3,354,253 - HP15_3201 0.65 -0.0
3,354,293 + HP15_3201 0.68 -0.9
3,354,380 - HP15_3201 0.75 -0.5
3,354,382 - HP15_3201 0.75 -1.1
3,354,407 + HP15_3201 0.78 +0.2
3,354,425 - HP15_3201 0.79 +0.6
3,354,425 - HP15_3201 0.79 -0.2
3,354,425 - HP15_3201 0.79 +1.0
3,354,452 - HP15_3201 0.81 -2.7
3,354,565 + -0.2
3,354,720 + -3.9
3,355,957 + -1.1
3,356,052 - -3.4
3,356,095 + -0.3
3,356,113 - HP15_3203 0.11 -3.0
3,356,123 - HP15_3203 0.12 -1.8
3,356,123 - HP15_3203 0.12 +0.2
3,356,217 - HP15_3203 0.19 +0.0
3,356,430 + HP15_3203 0.35 -0.1
3,356,517 - HP15_3203 0.42 -1.5
3,356,533 - HP15_3203 0.43 -2.5
3,356,540 + HP15_3203 0.44 -3.0
3,356,600 - HP15_3203 0.48 +0.8
3,356,606 - HP15_3203 0.49 -2.0
3,356,606 - HP15_3203 0.49 +0.9
3,356,606 - HP15_3203 0.49 -2.4
3,356,620 + HP15_3203 0.50 -2.8
3,356,628 - HP15_3203 0.50 -1.4
3,356,651 - HP15_3203 0.52 -2.4
3,356,651 - HP15_3203 0.52 -0.3
3,356,716 + HP15_3203 0.57 -1.4
3,356,860 - HP15_3203 0.68 +1.6
3,356,905 - HP15_3203 0.71 +0.7

Or see this region's nucleotide sequence