Experiment: monoculture; Experiment C, time point 6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_285 and HP15_286 are separated by 243 nucleotides HP15_286 and HP15_287 are separated by 22 nucleotides HP15_287 and HP15_288 are separated by 61 nucleotides
HP15_285: HP15_285 - conserved hypothetical protein, at 275,412 to 277,376
_285
HP15_286: HP15_286 - protein of unknown function YGGT, at 277,620 to 278,204
_286
HP15_287: HP15_287 - pyrroline-5-carboxylate reductase, at 278,227 to 279,060
_287
HP15_288: HP15_288 - alanine racemase domain protein, at 279,122 to 279,742
_288
Position (kb) 277
278
279 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 276.621 kb on - strand, within HP15_285 at 276.666 kb on + strand, within HP15_285 at 276.666 kb on + strand, within HP15_285 at 276.674 kb on - strand, within HP15_285 at 276.679 kb on + strand, within HP15_285 at 276.786 kb on + strand, within HP15_285 at 276.857 kb on + strand, within HP15_285 at 276.889 kb on + strand, within HP15_285 at 276.895 kb on + strand, within HP15_285 at 276.964 kb on - strand, within HP15_285 at 277.135 kb on - strand, within HP15_285 at 277.138 kb on + strand, within HP15_285 at 277.138 kb on + strand, within HP15_285 at 277.138 kb on + strand, within HP15_285 at 277.146 kb on - strand, within HP15_285 at 277.146 kb on - strand, within HP15_285 at 277.158 kb on - strand, within HP15_285 at 277.231 kb on - strand at 277.256 kb on + strand at 277.339 kb on + strand at 277.360 kb on + strand at 277.598 kb on - strand at 277.641 kb on + strand at 277.641 kb on + strand at 277.721 kb on + strand, within HP15_286 at 277.721 kb on + strand, within HP15_286 at 277.729 kb on - strand, within HP15_286 at 277.729 kb on - strand, within HP15_286 at 277.729 kb on - strand, within HP15_286 at 277.729 kb on - strand, within HP15_286 at 277.729 kb on - strand, within HP15_286 at 277.749 kb on + strand, within HP15_286 at 277.749 kb on - strand, within HP15_286 at 277.884 kb on - strand, within HP15_286 at 277.890 kb on + strand, within HP15_286 at 277.895 kb on + strand, within HP15_286 at 277.896 kb on - strand, within HP15_286 at 277.905 kb on + strand, within HP15_286 at 277.971 kb on + strand, within HP15_286 at 277.972 kb on - strand, within HP15_286 at 277.977 kb on + strand, within HP15_286 at 278.035 kb on - strand, within HP15_286 at 278.153 kb on + strand at 278.576 kb on + strand, within HP15_287 at 278.874 kb on + strand, within HP15_287 at 279.061 kb on + strand at 279.067 kb on + strand at 279.094 kb on + strand at 279.097 kb on - strand at 279.102 kb on - strand at 279.151 kb on + strand at 279.151 kb on + strand at 279.159 kb on - strand at 279.159 kb on - strand at 279.164 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 6 remove 276,621 - HP15_285 0.62 -0.3 276,666 + HP15_285 0.64 +1.4 276,666 + HP15_285 0.64 +1.9 276,674 - HP15_285 0.64 +3.0 276,679 + HP15_285 0.64 +0.4 276,786 + HP15_285 0.70 -1.3 276,857 + HP15_285 0.74 +3.2 276,889 + HP15_285 0.75 +2.3 276,895 + HP15_285 0.75 +1.7 276,964 - HP15_285 0.79 -2.0 277,135 - HP15_285 0.88 -1.6 277,138 + HP15_285 0.88 -0.0 277,138 + HP15_285 0.88 -1.3 277,138 + HP15_285 0.88 -1.0 277,146 - HP15_285 0.88 +1.9 277,146 - HP15_285 0.88 -0.7 277,158 - HP15_285 0.89 -0.4 277,231 - +1.6 277,256 + +2.2 277,339 + +0.6 277,360 + -0.1 277,598 - -0.4 277,641 + -0.1 277,641 + -2.4 277,721 + HP15_286 0.17 -1.1 277,721 + HP15_286 0.17 -1.3 277,729 - HP15_286 0.19 -1.2 277,729 - HP15_286 0.19 -0.2 277,729 - HP15_286 0.19 +1.7 277,729 - HP15_286 0.19 +1.5 277,729 - HP15_286 0.19 +1.6 277,749 + HP15_286 0.22 -0.3 277,749 - HP15_286 0.22 +1.3 277,884 - HP15_286 0.45 +2.9 277,890 + HP15_286 0.46 -0.4 277,895 + HP15_286 0.47 +1.2 277,896 - HP15_286 0.47 +2.0 277,905 + HP15_286 0.49 +0.6 277,971 + HP15_286 0.60 +0.4 277,972 - HP15_286 0.60 -1.1 277,977 + HP15_286 0.61 -0.0 278,035 - HP15_286 0.71 +3.0 278,153 + -0.1 278,576 + HP15_287 0.42 +0.9 278,874 + HP15_287 0.78 -2.2 279,061 + +0.9 279,067 + -0.3 279,094 + -2.1 279,097 - +1.3 279,102 - -0.5 279,151 + +0.1 279,151 + +1.3 279,159 - -0.3 279,159 - -1.8 279,164 - -2.8
Or see this region's nucleotide sequence