Experiment: monoculture; Experiment C, time point 6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2640 and HP15_2641 overlap by 11 nucleotides HP15_2641 and HP15_2642 are separated by 22 nucleotides HP15_2642 and HP15_2643 are separated by 190 nucleotides HP15_2643 and HP15_2644 are separated by 17 nucleotides
HP15_2640: HP15_2640 - arginine/ornithine succinyltransferase, at 2,789,974 to 2,791,113
_2640
HP15_2641: HP15_2641 - conserved hypothetical protein, at 2,791,103 to 2,791,909
_2641
HP15_2642: HP15_2642 - protein-L-isoaspartate O-methyltransferase, at 2,791,932 to 2,792,588
_2642
HP15_2643: HP15_2643 - conserved hypothetical protein, at 2,792,779 to 2,793,444
_2643
HP15_2644: HP15_2644 - permease, at 2,793,462 to 2,794,238
_2644
Position (kb)
2791
2792
2793 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2790.934 kb on + strand, within HP15_2640 at 2790.961 kb on - strand, within HP15_2640 at 2791.038 kb on + strand at 2791.038 kb on + strand at 2791.046 kb on - strand at 2791.046 kb on - strand at 2791.046 kb on - strand at 2791.046 kb on - strand at 2791.049 kb on + strand at 2791.112 kb on + strand at 2791.112 kb on + strand at 2791.120 kb on - strand at 2791.120 kb on - strand at 2791.385 kb on + strand, within HP15_2641 at 2791.466 kb on - strand, within HP15_2641 at 2791.467 kb on - strand, within HP15_2641 at 2791.479 kb on - strand, within HP15_2641 at 2791.530 kb on + strand, within HP15_2641 at 2791.630 kb on + strand, within HP15_2641 at 2791.675 kb on - strand, within HP15_2641 at 2791.965 kb on + strand at 2791.973 kb on - strand at 2792.045 kb on + strand, within HP15_2642 at 2792.045 kb on + strand, within HP15_2642 at 2792.059 kb on + strand, within HP15_2642 at 2792.059 kb on + strand, within HP15_2642 at 2792.231 kb on - strand, within HP15_2642 at 2792.258 kb on + strand, within HP15_2642 at 2792.266 kb on - strand, within HP15_2642 at 2792.310 kb on + strand, within HP15_2642 at 2792.357 kb on - strand, within HP15_2642 at 2792.383 kb on + strand, within HP15_2642 at 2792.413 kb on - strand, within HP15_2642 at 2792.438 kb on - strand, within HP15_2642 at 2792.565 kb on + strand at 2792.577 kb on + strand at 2792.580 kb on - strand at 2792.822 kb on + strand at 2792.932 kb on - strand, within HP15_2643 at 2792.959 kb on - strand, within HP15_2643 at 2793.219 kb on + strand, within HP15_2643 at 2793.219 kb on + strand, within HP15_2643 at 2793.227 kb on - strand, within HP15_2643 at 2793.227 kb on - strand, within HP15_2643 at 2793.254 kb on - strand, within HP15_2643 at 2793.254 kb on - strand, within HP15_2643 at 2793.294 kb on + strand, within HP15_2643 at 2793.511 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 6 remove 2,790,934 + HP15_2640 0.84 -1.1 2,790,961 - HP15_2640 0.87 -1.1 2,791,038 + +0.7 2,791,038 + +1.7 2,791,046 - +0.8 2,791,046 - +1.0 2,791,046 - +1.4 2,791,046 - +0.5 2,791,049 + -0.1 2,791,112 + +1.7 2,791,112 + -1.7 2,791,120 - -1.7 2,791,120 - +1.7 2,791,385 + HP15_2641 0.35 +0.3 2,791,466 - HP15_2641 0.45 +2.1 2,791,467 - HP15_2641 0.45 -1.3 2,791,479 - HP15_2641 0.47 -0.1 2,791,530 + HP15_2641 0.53 -0.5 2,791,630 + HP15_2641 0.65 +1.8 2,791,675 - HP15_2641 0.71 -0.8 2,791,965 + -0.7 2,791,973 - -2.1 2,792,045 + HP15_2642 0.17 -1.5 2,792,045 + HP15_2642 0.17 +1.7 2,792,059 + HP15_2642 0.19 +2.0 2,792,059 + HP15_2642 0.19 -0.3 2,792,231 - HP15_2642 0.46 +1.2 2,792,258 + HP15_2642 0.50 -1.7 2,792,266 - HP15_2642 0.51 +0.2 2,792,310 + HP15_2642 0.58 -0.1 2,792,357 - HP15_2642 0.65 -0.2 2,792,383 + HP15_2642 0.69 +2.4 2,792,413 - HP15_2642 0.73 +1.2 2,792,438 - HP15_2642 0.77 +0.2 2,792,565 + -1.3 2,792,577 + -0.5 2,792,580 - -1.2 2,792,822 + -1.3 2,792,932 - HP15_2643 0.23 -1.7 2,792,959 - HP15_2643 0.27 -0.6 2,793,219 + HP15_2643 0.66 -0.9 2,793,219 + HP15_2643 0.66 -0.4 2,793,227 - HP15_2643 0.67 +0.7 2,793,227 - HP15_2643 0.67 -0.2 2,793,254 - HP15_2643 0.71 -1.2 2,793,254 - HP15_2643 0.71 -0.9 2,793,294 + HP15_2643 0.77 +1.8 2,793,511 + +0.5
Or see this region's nucleotide sequence