Strain Fitness in Marinobacter adhaerens HP15 around HP15_2437

Experiment: monoculture; Experiment C, time point 6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2436 and HP15_2437 are separated by 188 nucleotidesHP15_2437 and HP15_2438 overlap by 1 nucleotidesHP15_2438 and HP15_2439 overlap by 4 nucleotides HP15_2435: HP15_2435 - ABC-type transport system involved in resistance to organic solvents, permease component, at 2,574,588 to 2,575,370 _2435 HP15_2436: HP15_2436 - toluene tolerance ABC efflux transporter, ATP-binding protein, at 2,575,367 to 2,576,179 _2436 HP15_2437: HP15_2437 - KpsF/GutQ family protein, at 2,576,368 to 2,577,347 _2437 HP15_2438: HP15_2438 - 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family, at 2,577,347 to 2,577,919 _2438 HP15_2439: HP15_2439 - protein containing DUF1239, at 2,577,916 to 2,578,500 _2439 Position (kb) 2576 2577 2578Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2575.377 kb on + strandat 2575.495 kb on + strand, within HP15_2436at 2575.500 kb on + strand, within HP15_2436at 2575.503 kb on - strand, within HP15_2436at 2575.603 kb on - strand, within HP15_2436at 2575.613 kb on + strand, within HP15_2436at 2575.629 kb on + strand, within HP15_2436at 2575.718 kb on + strand, within HP15_2436at 2575.721 kb on - strand, within HP15_2436at 2575.786 kb on + strand, within HP15_2436at 2575.910 kb on + strand, within HP15_2436at 2575.943 kb on + strand, within HP15_2436at 2575.951 kb on - strand, within HP15_2436at 2575.987 kb on + strand, within HP15_2436at 2576.007 kb on + strand, within HP15_2436at 2576.073 kb on - strand, within HP15_2436at 2576.073 kb on - strand, within HP15_2436at 2576.210 kb on + strandat 2576.260 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 6
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2,575,377 + -0.1
2,575,495 + HP15_2436 0.16 -1.7
2,575,500 + HP15_2436 0.16 +0.1
2,575,503 - HP15_2436 0.17 -0.6
2,575,603 - HP15_2436 0.29 -1.8
2,575,613 + HP15_2436 0.30 -1.2
2,575,629 + HP15_2436 0.32 +2.3
2,575,718 + HP15_2436 0.43 -0.6
2,575,721 - HP15_2436 0.44 +0.2
2,575,786 + HP15_2436 0.52 -0.9
2,575,910 + HP15_2436 0.67 +0.9
2,575,943 + HP15_2436 0.71 +2.0
2,575,951 - HP15_2436 0.72 -0.8
2,575,987 + HP15_2436 0.76 +2.5
2,576,007 + HP15_2436 0.79 -3.3
2,576,073 - HP15_2436 0.87 -1.1
2,576,073 - HP15_2436 0.87 +1.6
2,576,210 + -1.1
2,576,260 + +1.1

Or see this region's nucleotide sequence