Strain Fitness in Marinobacter adhaerens HP15 around HP15_2217

Experiment: monoculture; Experiment C, time point 6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2215 and HP15_2216 are separated by 43 nucleotidesHP15_2216 and HP15_2217 are separated by 100 nucleotidesHP15_2217 and HP15_2218 are separated by 138 nucleotidesHP15_2218 and HP15_2219 are separated by 4 nucleotides HP15_2215: HP15_2215 - fatty acid/phospholipid synthesis protein PlsX, at 2,332,684 to 2,333,685 _2215 HP15_2216: HP15_2216 - ribosomal protein L32p, at 2,333,729 to 2,333,908 _2216 HP15_2217: HP15_2217 - protein containing DUF177, at 2,334,009 to 2,334,563 _2217 HP15_2218: HP15_2218 - Maf-like protein, at 2,334,702 to 2,335,310 _2218 HP15_2219: HP15_2219 - family S49 unassigned peptidase, at 2,335,315 to 2,336,358 _2219 Position (kb) 2334 2335Strain fitness (log2 ratio) -2 -1 0 1at 2333.718 kb on - strandat 2334.605 kb on - strandat 2334.625 kb on + strandat 2334.818 kb on + strand, within HP15_2218at 2334.925 kb on - strand, within HP15_2218at 2334.950 kb on - strand, within HP15_2218at 2334.950 kb on - strand, within HP15_2218at 2334.950 kb on - strand, within HP15_2218at 2334.950 kb on - strand, within HP15_2218at 2335.000 kb on + strand, within HP15_2218at 2335.006 kb on + strand, within HP15_2218at 2335.016 kb on - strand, within HP15_2218at 2335.180 kb on + strand, within HP15_2218at 2335.180 kb on + strand, within HP15_2218at 2335.180 kb on + strand, within HP15_2218at 2335.190 kb on + strand, within HP15_2218at 2335.212 kb on + strand, within HP15_2218at 2335.417 kb on + strandat 2335.425 kb on + strand, within HP15_2219at 2335.450 kb on - strand, within HP15_2219at 2335.462 kb on + strand, within HP15_2219at 2335.480 kb on - strand, within HP15_2219at 2335.525 kb on - strand, within HP15_2219

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 6
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2,333,718 - -0.7
2,334,605 - +0.9
2,334,625 + -1.6
2,334,818 + HP15_2218 0.19 -0.3
2,334,925 - HP15_2218 0.37 -0.2
2,334,950 - HP15_2218 0.41 +0.4
2,334,950 - HP15_2218 0.41 -0.3
2,334,950 - HP15_2218 0.41 -1.4
2,334,950 - HP15_2218 0.41 -0.2
2,335,000 + HP15_2218 0.49 +0.2
2,335,006 + HP15_2218 0.50 -0.4
2,335,016 - HP15_2218 0.52 -1.3
2,335,180 + HP15_2218 0.78 -1.5
2,335,180 + HP15_2218 0.78 -0.4
2,335,180 + HP15_2218 0.78 -1.6
2,335,190 + HP15_2218 0.80 +1.0
2,335,212 + HP15_2218 0.84 -1.4
2,335,417 + +0.3
2,335,425 + HP15_2219 0.11 +1.6
2,335,450 - HP15_2219 0.13 +0.9
2,335,462 + HP15_2219 0.14 -2.2
2,335,480 - HP15_2219 0.16 +0.3
2,335,525 - HP15_2219 0.20 +0.7

Or see this region's nucleotide sequence