Strain Fitness in Marinobacter adhaerens HP15 around HP15_2216

Experiment: monoculture; Experiment C, time point 6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2215 and HP15_2216 are separated by 43 nucleotidesHP15_2216 and HP15_2217 are separated by 100 nucleotidesHP15_2217 and HP15_2218 are separated by 138 nucleotides HP15_2215: HP15_2215 - fatty acid/phospholipid synthesis protein PlsX, at 2,332,684 to 2,333,685 _2215 HP15_2216: HP15_2216 - ribosomal protein L32p, at 2,333,729 to 2,333,908 _2216 HP15_2217: HP15_2217 - protein containing DUF177, at 2,334,009 to 2,334,563 _2217 HP15_2218: HP15_2218 - Maf-like protein, at 2,334,702 to 2,335,310 _2218 Position (kb) 2333 2334Strain fitness (log2 ratio) -1 0 1at 2333.718 kb on - strandat 2334.605 kb on - strandat 2334.625 kb on + strandat 2334.818 kb on + strand, within HP15_2218

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 6
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2,333,718 - -0.7
2,334,605 - +0.9
2,334,625 + -1.6
2,334,818 + HP15_2218 0.19 -0.3

Or see this region's nucleotide sequence