Experiment: monoculture; Experiment C, time point 6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2190 and HP15_2192 overlap by 4 nucleotides HP15_2192 and HP15_2193 are separated by 39 nucleotides HP15_2193 and HP15_2194 are separated by 38 nucleotides
HP15_2190: HP15_2190 - peptidyl-prolyl cis-trans isomerase B, at 2,308,902 to 2,309,402
_2190
HP15_2192: HP15_2192 - UDP-2,3-diacylglucosamine hydrolase, at 2,309,399 to 2,310,124
_2192
HP15_2193: HP15_2193 - amino-acid ABC transporter ATP-binding protein-like protein, at 2,310,164 to 2,310,934
_2193
HP15_2194: HP15_2194 - amino acid ABC transporter, permease protein, at 2,310,973 to 2,312,061
_2194
Position (kb)
2310
2311 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2309.220 kb on + strand, within HP15_2190 at 2309.296 kb on + strand, within HP15_2190 at 2310.281 kb on + strand, within HP15_2193 at 2310.321 kb on - strand, within HP15_2193 at 2310.423 kb on + strand, within HP15_2193 at 2310.429 kb on + strand, within HP15_2193 at 2310.466 kb on + strand, within HP15_2193 at 2310.516 kb on + strand, within HP15_2193 at 2310.551 kb on + strand, within HP15_2193 at 2310.738 kb on - strand, within HP15_2193 at 2310.753 kb on + strand, within HP15_2193 at 2310.760 kb on + strand, within HP15_2193 at 2310.965 kb on - strand at 2310.984 kb on - strand at 2310.987 kb on - strand at 2311.117 kb on - strand, within HP15_2194 at 2311.122 kb on - strand, within HP15_2194 at 2311.122 kb on - strand, within HP15_2194 at 2311.124 kb on + strand, within HP15_2194 at 2311.124 kb on + strand, within HP15_2194 at 2311.132 kb on - strand, within HP15_2194 at 2311.177 kb on - strand, within HP15_2194 at 2311.261 kb on + strand, within HP15_2194 at 2311.356 kb on + strand, within HP15_2194 at 2311.358 kb on - strand, within HP15_2194 at 2311.364 kb on - strand, within HP15_2194 at 2311.364 kb on - strand, within HP15_2194 at 2311.364 kb on - strand, within HP15_2194 at 2311.364 kb on - strand, within HP15_2194 at 2311.364 kb on - strand, within HP15_2194 at 2311.593 kb on + strand, within HP15_2194 at 2311.615 kb on + strand, within HP15_2194 at 2311.703 kb on - strand, within HP15_2194 at 2311.737 kb on - strand, within HP15_2194 at 2311.857 kb on + strand, within HP15_2194 at 2311.923 kb on + strand, within HP15_2194 at 2311.923 kb on + strand, within HP15_2194 at 2311.923 kb on + strand, within HP15_2194 at 2311.931 kb on - strand, within HP15_2194 at 2311.931 kb on - strand, within HP15_2194 at 2311.931 kb on - strand, within HP15_2194
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 6 remove 2,309,220 + HP15_2190 0.63 +0.7 2,309,296 + HP15_2190 0.79 +1.1 2,310,281 + HP15_2193 0.15 +0.5 2,310,321 - HP15_2193 0.20 -0.7 2,310,423 + HP15_2193 0.34 -0.4 2,310,429 + HP15_2193 0.34 -1.0 2,310,466 + HP15_2193 0.39 -0.7 2,310,516 + HP15_2193 0.46 -1.3 2,310,551 + HP15_2193 0.50 -0.9 2,310,738 - HP15_2193 0.74 +1.1 2,310,753 + HP15_2193 0.76 -1.5 2,310,760 + HP15_2193 0.77 -1.8 2,310,965 - -0.3 2,310,984 - +0.1 2,310,987 - -0.3 2,311,117 - HP15_2194 0.13 -0.2 2,311,122 - HP15_2194 0.14 +0.5 2,311,122 - HP15_2194 0.14 -0.6 2,311,124 + HP15_2194 0.14 -0.3 2,311,124 + HP15_2194 0.14 +2.0 2,311,132 - HP15_2194 0.15 -1.5 2,311,177 - HP15_2194 0.19 -0.5 2,311,261 + HP15_2194 0.26 +1.5 2,311,356 + HP15_2194 0.35 +1.1 2,311,358 - HP15_2194 0.35 +1.0 2,311,364 - HP15_2194 0.36 +1.2 2,311,364 - HP15_2194 0.36 -1.2 2,311,364 - HP15_2194 0.36 +0.4 2,311,364 - HP15_2194 0.36 -0.5 2,311,364 - HP15_2194 0.36 -0.7 2,311,593 + HP15_2194 0.57 -2.8 2,311,615 + HP15_2194 0.59 -0.9 2,311,703 - HP15_2194 0.67 +1.5 2,311,737 - HP15_2194 0.70 +1.4 2,311,857 + HP15_2194 0.81 -0.7 2,311,923 + HP15_2194 0.87 +1.8 2,311,923 + HP15_2194 0.87 -0.7 2,311,923 + HP15_2194 0.87 +0.3 2,311,931 - HP15_2194 0.88 -0.1 2,311,931 - HP15_2194 0.88 +0.5 2,311,931 - HP15_2194 0.88 +2.8
Or see this region's nucleotide sequence