Strain Fitness in Marinobacter adhaerens HP15 around HP15_2132

Experiment: monoculture; Experiment C, time point 6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2129 and HP15_2130 are separated by 8 nucleotidesHP15_2130 and HP15_2131 are separated by 137 nucleotidesHP15_2131 and HP15_2132 are separated by 9 nucleotidesHP15_2132 and HP15_2133 are separated by 99 nucleotides HP15_2129: HP15_2129 - ABC transporter ATP-binding protein-like protein, at 2,231,273 to 2,232,004 _2129 HP15_2130: HP15_2130 - transcriptional regulator, TraR/DksA family, at 2,232,013 to 2,232,333 _2130 HP15_2131: HP15_2131 - ATP-dependent protease HslVU (ClpYQ), ATPase subunit-like protein, at 2,232,471 to 2,232,809 _2131 HP15_2132: HP15_2132 - polyhydroxyalkanoic acid synthase, at 2,232,819 to 2,234,621 _2132 HP15_2133: HP15_2133 - solute symporter-like protein, at 2,234,721 to 2,236,085 _2133 Position (kb) 2232 2233 2234 2235Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2231.830 kb on - strand, within HP15_2129at 2231.915 kb on + strand, within HP15_2129at 2231.963 kb on + strandat 2232.016 kb on + strandat 2232.016 kb on + strandat 2232.018 kb on + strandat 2232.028 kb on - strandat 2232.080 kb on - strand, within HP15_2130at 2232.107 kb on + strand, within HP15_2130at 2232.394 kb on + strandat 2232.433 kb on - strandat 2232.473 kb on - strandat 2232.597 kb on - strand, within HP15_2131at 2232.597 kb on - strand, within HP15_2131at 2232.667 kb on - strand, within HP15_2131at 2232.708 kb on + strand, within HP15_2131at 2232.765 kb on + strand, within HP15_2131at 2232.779 kb on + strandat 2232.780 kb on + strandat 2232.787 kb on - strandat 2232.787 kb on - strandat 2232.787 kb on - strandat 2232.819 kb on - strandat 2232.830 kb on + strandat 2232.950 kb on + strandat 2232.950 kb on + strandat 2233.067 kb on + strand, within HP15_2132at 2233.215 kb on + strand, within HP15_2132at 2233.251 kb on - strand, within HP15_2132at 2233.287 kb on + strand, within HP15_2132at 2233.287 kb on + strand, within HP15_2132at 2233.348 kb on - strand, within HP15_2132at 2233.605 kb on + strand, within HP15_2132at 2233.606 kb on - strand, within HP15_2132at 2233.838 kb on + strand, within HP15_2132at 2233.921 kb on - strand, within HP15_2132at 2234.007 kb on + strand, within HP15_2132at 2234.015 kb on - strand, within HP15_2132at 2234.149 kb on + strand, within HP15_2132at 2234.208 kb on - strand, within HP15_2132at 2234.221 kb on + strand, within HP15_2132at 2234.269 kb on + strand, within HP15_2132at 2234.315 kb on + strand, within HP15_2132at 2234.443 kb on + strandat 2234.599 kb on - strandat 2234.616 kb on + strandat 2234.895 kb on - strand, within HP15_2133at 2235.053 kb on + strand, within HP15_2133at 2235.212 kb on + strand, within HP15_2133at 2235.559 kb on + strand, within HP15_2133at 2235.572 kb on - strand, within HP15_2133at 2235.607 kb on - strand, within HP15_2133

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 6
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2,231,830 - HP15_2129 0.76 -0.9
2,231,915 + HP15_2129 0.88 -0.7
2,231,963 + +1.6
2,232,016 + -1.8
2,232,016 + -1.8
2,232,018 + +0.9
2,232,028 - -2.8
2,232,080 - HP15_2130 0.21 +2.4
2,232,107 + HP15_2130 0.29 +2.8
2,232,394 + -1.6
2,232,433 - -0.3
2,232,473 - +1.2
2,232,597 - HP15_2131 0.37 -0.4
2,232,597 - HP15_2131 0.37 +0.0
2,232,667 - HP15_2131 0.58 +1.4
2,232,708 + HP15_2131 0.70 -0.3
2,232,765 + HP15_2131 0.87 +2.0
2,232,779 + -0.1
2,232,780 + +1.3
2,232,787 - -1.3
2,232,787 - +3.1
2,232,787 - -0.0
2,232,819 - -0.7
2,232,830 + +1.8
2,232,950 + +1.8
2,232,950 + +1.3
2,233,067 + HP15_2132 0.14 +1.5
2,233,215 + HP15_2132 0.22 +0.2
2,233,251 - HP15_2132 0.24 +0.4
2,233,287 + HP15_2132 0.26 -2.2
2,233,287 + HP15_2132 0.26 -2.1
2,233,348 - HP15_2132 0.29 -0.8
2,233,605 + HP15_2132 0.44 -0.4
2,233,606 - HP15_2132 0.44 +1.6
2,233,838 + HP15_2132 0.57 +0.4
2,233,921 - HP15_2132 0.61 +0.1
2,234,007 + HP15_2132 0.66 +1.0
2,234,015 - HP15_2132 0.66 +1.2
2,234,149 + HP15_2132 0.74 +1.7
2,234,208 - HP15_2132 0.77 -1.4
2,234,221 + HP15_2132 0.78 +1.0
2,234,269 + HP15_2132 0.80 +1.4
2,234,315 + HP15_2132 0.83 -1.4
2,234,443 + -3.4
2,234,599 - +0.6
2,234,616 + +2.4
2,234,895 - HP15_2133 0.13 +0.9
2,235,053 + HP15_2133 0.24 +1.3
2,235,212 + HP15_2133 0.36 -0.9
2,235,559 + HP15_2133 0.61 -0.3
2,235,572 - HP15_2133 0.62 -0.2
2,235,607 - HP15_2133 0.65 -0.5

Or see this region's nucleotide sequence