Experiment: monoculture; Experiment C, time point 6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2128 and HP15_2129 are separated by 21 nucleotides HP15_2129 and HP15_2130 are separated by 8 nucleotides HP15_2130 and HP15_2131 are separated by 137 nucleotides HP15_2131 and HP15_2132 are separated by 9 nucleotides
HP15_2128: HP15_2128 - ABC transporter, permease protein, at 2,228,870 to 2,231,251
_2128
HP15_2129: HP15_2129 - ABC transporter ATP-binding protein-like protein, at 2,231,273 to 2,232,004
_2129
HP15_2130: HP15_2130 - transcriptional regulator, TraR/DksA family, at 2,232,013 to 2,232,333
_2130
HP15_2131: HP15_2131 - ATP-dependent protease HslVU (ClpYQ), ATPase subunit-like protein, at 2,232,471 to 2,232,809
_2131
HP15_2132: HP15_2132 - polyhydroxyalkanoic acid synthase, at 2,232,819 to 2,234,621
_2132
Position (kb)
2232
2233 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2231.107 kb on + strand at 2231.156 kb on - strand at 2231.171 kb on + strand at 2231.262 kb on + strand at 2231.270 kb on - strand at 2231.292 kb on - strand at 2231.372 kb on + strand, within HP15_2129 at 2231.406 kb on - strand, within HP15_2129 at 2231.424 kb on + strand, within HP15_2129 at 2231.429 kb on + strand, within HP15_2129 at 2231.432 kb on - strand, within HP15_2129 at 2231.502 kb on - strand, within HP15_2129 at 2231.749 kb on + strand, within HP15_2129 at 2231.830 kb on - strand, within HP15_2129 at 2231.915 kb on + strand, within HP15_2129 at 2231.963 kb on + strand at 2232.016 kb on + strand at 2232.016 kb on + strand at 2232.018 kb on + strand at 2232.028 kb on - strand at 2232.080 kb on - strand, within HP15_2130 at 2232.107 kb on + strand, within HP15_2130 at 2232.394 kb on + strand at 2232.433 kb on - strand at 2232.473 kb on - strand at 2232.597 kb on - strand, within HP15_2131 at 2232.597 kb on - strand, within HP15_2131 at 2232.667 kb on - strand, within HP15_2131 at 2232.708 kb on + strand, within HP15_2131 at 2232.765 kb on + strand, within HP15_2131 at 2232.779 kb on + strand at 2232.780 kb on + strand at 2232.787 kb on - strand at 2232.787 kb on - strand at 2232.787 kb on - strand at 2232.819 kb on - strand at 2232.830 kb on + strand at 2232.950 kb on + strand at 2232.950 kb on + strand at 2233.067 kb on + strand, within HP15_2132 at 2233.215 kb on + strand, within HP15_2132 at 2233.251 kb on - strand, within HP15_2132 at 2233.287 kb on + strand, within HP15_2132 at 2233.287 kb on + strand, within HP15_2132
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 6 remove 2,231,107 + -0.4 2,231,156 - +2.4 2,231,171 + +0.8 2,231,262 + +1.9 2,231,270 - -0.5 2,231,292 - +1.8 2,231,372 + HP15_2129 0.14 -1.6 2,231,406 - HP15_2129 0.18 +0.2 2,231,424 + HP15_2129 0.21 +2.2 2,231,429 + HP15_2129 0.21 +0.5 2,231,432 - HP15_2129 0.22 +1.4 2,231,502 - HP15_2129 0.31 +0.8 2,231,749 + HP15_2129 0.65 -0.2 2,231,830 - HP15_2129 0.76 -0.9 2,231,915 + HP15_2129 0.88 -0.7 2,231,963 + +1.6 2,232,016 + -1.8 2,232,016 + -1.8 2,232,018 + +0.9 2,232,028 - -2.8 2,232,080 - HP15_2130 0.21 +2.4 2,232,107 + HP15_2130 0.29 +2.8 2,232,394 + -1.6 2,232,433 - -0.3 2,232,473 - +1.2 2,232,597 - HP15_2131 0.37 -0.4 2,232,597 - HP15_2131 0.37 +0.0 2,232,667 - HP15_2131 0.58 +1.4 2,232,708 + HP15_2131 0.70 -0.3 2,232,765 + HP15_2131 0.87 +2.0 2,232,779 + -0.1 2,232,780 + +1.3 2,232,787 - -1.3 2,232,787 - +3.1 2,232,787 - -0.0 2,232,819 - -0.7 2,232,830 + +1.8 2,232,950 + +1.8 2,232,950 + +1.3 2,233,067 + HP15_2132 0.14 +1.5 2,233,215 + HP15_2132 0.22 +0.2 2,233,251 - HP15_2132 0.24 +0.4 2,233,287 + HP15_2132 0.26 -2.2 2,233,287 + HP15_2132 0.26 -2.1
Or see this region's nucleotide sequence