Strain Fitness in Marinobacter adhaerens HP15 around HP15_2130

Experiment: monoculture; Experiment C, time point 6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2128 and HP15_2129 are separated by 21 nucleotidesHP15_2129 and HP15_2130 are separated by 8 nucleotidesHP15_2130 and HP15_2131 are separated by 137 nucleotidesHP15_2131 and HP15_2132 are separated by 9 nucleotides HP15_2128: HP15_2128 - ABC transporter, permease protein, at 2,228,870 to 2,231,251 _2128 HP15_2129: HP15_2129 - ABC transporter ATP-binding protein-like protein, at 2,231,273 to 2,232,004 _2129 HP15_2130: HP15_2130 - transcriptional regulator, TraR/DksA family, at 2,232,013 to 2,232,333 _2130 HP15_2131: HP15_2131 - ATP-dependent protease HslVU (ClpYQ), ATPase subunit-like protein, at 2,232,471 to 2,232,809 _2131 HP15_2132: HP15_2132 - polyhydroxyalkanoic acid synthase, at 2,232,819 to 2,234,621 _2132 Position (kb) 2232 2233Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2231.107 kb on + strandat 2231.156 kb on - strandat 2231.171 kb on + strandat 2231.262 kb on + strandat 2231.270 kb on - strandat 2231.292 kb on - strandat 2231.372 kb on + strand, within HP15_2129at 2231.406 kb on - strand, within HP15_2129at 2231.424 kb on + strand, within HP15_2129at 2231.429 kb on + strand, within HP15_2129at 2231.432 kb on - strand, within HP15_2129at 2231.502 kb on - strand, within HP15_2129at 2231.749 kb on + strand, within HP15_2129at 2231.830 kb on - strand, within HP15_2129at 2231.915 kb on + strand, within HP15_2129at 2231.963 kb on + strandat 2232.016 kb on + strandat 2232.016 kb on + strandat 2232.018 kb on + strandat 2232.028 kb on - strandat 2232.080 kb on - strand, within HP15_2130at 2232.107 kb on + strand, within HP15_2130at 2232.394 kb on + strandat 2232.433 kb on - strandat 2232.473 kb on - strandat 2232.597 kb on - strand, within HP15_2131at 2232.597 kb on - strand, within HP15_2131at 2232.667 kb on - strand, within HP15_2131at 2232.708 kb on + strand, within HP15_2131at 2232.765 kb on + strand, within HP15_2131at 2232.779 kb on + strandat 2232.780 kb on + strandat 2232.787 kb on - strandat 2232.787 kb on - strandat 2232.787 kb on - strandat 2232.819 kb on - strandat 2232.830 kb on + strandat 2232.950 kb on + strandat 2232.950 kb on + strandat 2233.067 kb on + strand, within HP15_2132at 2233.215 kb on + strand, within HP15_2132at 2233.251 kb on - strand, within HP15_2132at 2233.287 kb on + strand, within HP15_2132at 2233.287 kb on + strand, within HP15_2132

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 6
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2,231,107 + -0.4
2,231,156 - +2.4
2,231,171 + +0.8
2,231,262 + +1.9
2,231,270 - -0.5
2,231,292 - +1.8
2,231,372 + HP15_2129 0.14 -1.6
2,231,406 - HP15_2129 0.18 +0.2
2,231,424 + HP15_2129 0.21 +2.2
2,231,429 + HP15_2129 0.21 +0.5
2,231,432 - HP15_2129 0.22 +1.4
2,231,502 - HP15_2129 0.31 +0.8
2,231,749 + HP15_2129 0.65 -0.2
2,231,830 - HP15_2129 0.76 -0.9
2,231,915 + HP15_2129 0.88 -0.7
2,231,963 + +1.6
2,232,016 + -1.8
2,232,016 + -1.8
2,232,018 + +0.9
2,232,028 - -2.8
2,232,080 - HP15_2130 0.21 +2.4
2,232,107 + HP15_2130 0.29 +2.8
2,232,394 + -1.6
2,232,433 - -0.3
2,232,473 - +1.2
2,232,597 - HP15_2131 0.37 -0.4
2,232,597 - HP15_2131 0.37 +0.0
2,232,667 - HP15_2131 0.58 +1.4
2,232,708 + HP15_2131 0.70 -0.3
2,232,765 + HP15_2131 0.87 +2.0
2,232,779 + -0.1
2,232,780 + +1.3
2,232,787 - -1.3
2,232,787 - +3.1
2,232,787 - -0.0
2,232,819 - -0.7
2,232,830 + +1.8
2,232,950 + +1.8
2,232,950 + +1.3
2,233,067 + HP15_2132 0.14 +1.5
2,233,215 + HP15_2132 0.22 +0.2
2,233,251 - HP15_2132 0.24 +0.4
2,233,287 + HP15_2132 0.26 -2.2
2,233,287 + HP15_2132 0.26 -2.1

Or see this region's nucleotide sequence