Experiment: monoculture; Experiment C, time point 6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2101 and HP15_2102 are separated by 11 nucleotides HP15_2102 and HP15_2103 are separated by 86 nucleotides HP15_2103 and HP15_2104 overlap by 4 nucleotides HP15_2104 and HP15_2105 are separated by 112 nucleotides
HP15_2101: HP15_2101 - membrane protein containing cytochrome c assembly protein, transmembrane region domain, at 2,200,291 to 2,202,186
_2101
HP15_2102: HP15_2102 - SirA family protein, at 2,202,198 to 2,202,437
_2102
HP15_2103: HP15_2103 - antibiotic biosynthesis monooxygenase, at 2,202,524 to 2,202,814
_2103
HP15_2104: HP15_2104 - putative RNA 2'-O-ribose methyltransferase, at 2,202,811 to 2,203,887
_2104
HP15_2105: HP15_2105 - response regulator receiver domain protein (CheY-), at 2,204,000 to 2,205,841
_2105
Position (kb)
2202
2203
2204 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2201.891 kb on - strand, within HP15_2101 at 2202.499 kb on - strand at 2202.572 kb on + strand, within HP15_2103 at 2202.604 kb on - strand, within HP15_2103 at 2202.672 kb on + strand, within HP15_2103 at 2202.877 kb on - strand at 2202.993 kb on + strand, within HP15_2104 at 2203.001 kb on - strand, within HP15_2104 at 2203.002 kb on - strand, within HP15_2104 at 2203.098 kb on - strand, within HP15_2104 at 2203.122 kb on + strand, within HP15_2104 at 2203.130 kb on - strand, within HP15_2104 at 2203.256 kb on - strand, within HP15_2104 at 2203.358 kb on + strand, within HP15_2104 at 2203.431 kb on + strand, within HP15_2104 at 2203.440 kb on - strand, within HP15_2104 at 2203.461 kb on + strand, within HP15_2104 at 2203.461 kb on + strand, within HP15_2104 at 2203.466 kb on + strand, within HP15_2104 at 2203.466 kb on + strand, within HP15_2104 at 2203.474 kb on - strand, within HP15_2104 at 2203.528 kb on + strand, within HP15_2104 at 2203.537 kb on + strand, within HP15_2104 at 2203.709 kb on - strand, within HP15_2104 at 2203.709 kb on - strand, within HP15_2104 at 2203.744 kb on - strand, within HP15_2104 at 2203.857 kb on - strand at 2204.059 kb on - strand at 2204.062 kb on + strand at 2204.070 kb on - strand at 2204.081 kb on + strand at 2204.081 kb on - strand at 2204.238 kb on + strand, within HP15_2105 at 2204.260 kb on + strand, within HP15_2105 at 2204.268 kb on - strand, within HP15_2105 at 2204.285 kb on - strand, within HP15_2105 at 2204.319 kb on + strand, within HP15_2105 at 2204.326 kb on - strand, within HP15_2105 at 2204.582 kb on + strand, within HP15_2105 at 2204.597 kb on - strand, within HP15_2105 at 2204.599 kb on + strand, within HP15_2105 at 2204.602 kb on - strand, within HP15_2105 at 2204.602 kb on - strand, within HP15_2105 at 2204.612 kb on + strand, within HP15_2105 at 2204.620 kb on - strand, within HP15_2105 at 2204.743 kb on - strand, within HP15_2105
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 6 remove 2,201,891 - HP15_2101 0.84 -1.7 2,202,499 - -0.8 2,202,572 + HP15_2103 0.16 -0.9 2,202,604 - HP15_2103 0.27 +1.7 2,202,672 + HP15_2103 0.51 +0.2 2,202,877 - -0.1 2,202,993 + HP15_2104 0.17 +2.2 2,203,001 - HP15_2104 0.18 -0.4 2,203,002 - HP15_2104 0.18 +0.3 2,203,098 - HP15_2104 0.27 -1.1 2,203,122 + HP15_2104 0.29 +0.5 2,203,130 - HP15_2104 0.30 -2.3 2,203,256 - HP15_2104 0.41 -0.6 2,203,358 + HP15_2104 0.51 +0.9 2,203,431 + HP15_2104 0.58 -1.1 2,203,440 - HP15_2104 0.58 -0.9 2,203,461 + HP15_2104 0.60 +0.6 2,203,461 + HP15_2104 0.60 -2.9 2,203,466 + HP15_2104 0.61 -1.1 2,203,466 + HP15_2104 0.61 -0.2 2,203,474 - HP15_2104 0.62 -0.7 2,203,528 + HP15_2104 0.67 -1.4 2,203,537 + HP15_2104 0.67 +0.2 2,203,709 - HP15_2104 0.83 -1.8 2,203,709 - HP15_2104 0.83 -0.4 2,203,744 - HP15_2104 0.87 -0.9 2,203,857 - +1.5 2,204,059 - +1.6 2,204,062 + +0.3 2,204,070 - -2.1 2,204,081 + -1.4 2,204,081 - +0.3 2,204,238 + HP15_2105 0.13 -0.2 2,204,260 + HP15_2105 0.14 -0.6 2,204,268 - HP15_2105 0.15 -0.2 2,204,285 - HP15_2105 0.15 +1.4 2,204,319 + HP15_2105 0.17 +0.4 2,204,326 - HP15_2105 0.18 -0.9 2,204,582 + HP15_2105 0.32 -0.3 2,204,597 - HP15_2105 0.32 +1.7 2,204,599 + HP15_2105 0.33 -0.3 2,204,602 - HP15_2105 0.33 +1.3 2,204,602 - HP15_2105 0.33 -0.2 2,204,612 + HP15_2105 0.33 +1.6 2,204,620 - HP15_2105 0.34 -1.1 2,204,743 - HP15_2105 0.40 -1.1
Or see this region's nucleotide sequence