Strain Fitness in Marinobacter adhaerens HP15 around HP15_2104

Experiment: monoculture; Experiment C, time point 6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2101 and HP15_2102 are separated by 11 nucleotidesHP15_2102 and HP15_2103 are separated by 86 nucleotidesHP15_2103 and HP15_2104 overlap by 4 nucleotidesHP15_2104 and HP15_2105 are separated by 112 nucleotides HP15_2101: HP15_2101 - membrane protein containing cytochrome c assembly protein, transmembrane region domain, at 2,200,291 to 2,202,186 _2101 HP15_2102: HP15_2102 - SirA family protein, at 2,202,198 to 2,202,437 _2102 HP15_2103: HP15_2103 - antibiotic biosynthesis monooxygenase, at 2,202,524 to 2,202,814 _2103 HP15_2104: HP15_2104 - putative RNA 2'-O-ribose methyltransferase, at 2,202,811 to 2,203,887 _2104 HP15_2105: HP15_2105 - response regulator receiver domain protein (CheY-), at 2,204,000 to 2,205,841 _2105 Position (kb) 2202 2203 2204Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2201.891 kb on - strand, within HP15_2101at 2202.499 kb on - strandat 2202.572 kb on + strand, within HP15_2103at 2202.604 kb on - strand, within HP15_2103at 2202.672 kb on + strand, within HP15_2103at 2202.877 kb on - strandat 2202.993 kb on + strand, within HP15_2104at 2203.001 kb on - strand, within HP15_2104at 2203.002 kb on - strand, within HP15_2104at 2203.098 kb on - strand, within HP15_2104at 2203.122 kb on + strand, within HP15_2104at 2203.130 kb on - strand, within HP15_2104at 2203.256 kb on - strand, within HP15_2104at 2203.358 kb on + strand, within HP15_2104at 2203.431 kb on + strand, within HP15_2104at 2203.440 kb on - strand, within HP15_2104at 2203.461 kb on + strand, within HP15_2104at 2203.461 kb on + strand, within HP15_2104at 2203.466 kb on + strand, within HP15_2104at 2203.466 kb on + strand, within HP15_2104at 2203.474 kb on - strand, within HP15_2104at 2203.528 kb on + strand, within HP15_2104at 2203.537 kb on + strand, within HP15_2104at 2203.709 kb on - strand, within HP15_2104at 2203.709 kb on - strand, within HP15_2104at 2203.744 kb on - strand, within HP15_2104at 2203.857 kb on - strandat 2204.059 kb on - strandat 2204.062 kb on + strandat 2204.070 kb on - strandat 2204.081 kb on + strandat 2204.081 kb on - strandat 2204.238 kb on + strand, within HP15_2105at 2204.260 kb on + strand, within HP15_2105at 2204.268 kb on - strand, within HP15_2105at 2204.285 kb on - strand, within HP15_2105at 2204.319 kb on + strand, within HP15_2105at 2204.326 kb on - strand, within HP15_2105at 2204.582 kb on + strand, within HP15_2105at 2204.597 kb on - strand, within HP15_2105at 2204.599 kb on + strand, within HP15_2105at 2204.602 kb on - strand, within HP15_2105at 2204.602 kb on - strand, within HP15_2105at 2204.612 kb on + strand, within HP15_2105at 2204.620 kb on - strand, within HP15_2105at 2204.743 kb on - strand, within HP15_2105

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 6
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2,201,891 - HP15_2101 0.84 -1.7
2,202,499 - -0.8
2,202,572 + HP15_2103 0.16 -0.9
2,202,604 - HP15_2103 0.27 +1.7
2,202,672 + HP15_2103 0.51 +0.2
2,202,877 - -0.1
2,202,993 + HP15_2104 0.17 +2.2
2,203,001 - HP15_2104 0.18 -0.4
2,203,002 - HP15_2104 0.18 +0.3
2,203,098 - HP15_2104 0.27 -1.1
2,203,122 + HP15_2104 0.29 +0.5
2,203,130 - HP15_2104 0.30 -2.3
2,203,256 - HP15_2104 0.41 -0.6
2,203,358 + HP15_2104 0.51 +0.9
2,203,431 + HP15_2104 0.58 -1.1
2,203,440 - HP15_2104 0.58 -0.9
2,203,461 + HP15_2104 0.60 +0.6
2,203,461 + HP15_2104 0.60 -2.9
2,203,466 + HP15_2104 0.61 -1.1
2,203,466 + HP15_2104 0.61 -0.2
2,203,474 - HP15_2104 0.62 -0.7
2,203,528 + HP15_2104 0.67 -1.4
2,203,537 + HP15_2104 0.67 +0.2
2,203,709 - HP15_2104 0.83 -1.8
2,203,709 - HP15_2104 0.83 -0.4
2,203,744 - HP15_2104 0.87 -0.9
2,203,857 - +1.5
2,204,059 - +1.6
2,204,062 + +0.3
2,204,070 - -2.1
2,204,081 + -1.4
2,204,081 - +0.3
2,204,238 + HP15_2105 0.13 -0.2
2,204,260 + HP15_2105 0.14 -0.6
2,204,268 - HP15_2105 0.15 -0.2
2,204,285 - HP15_2105 0.15 +1.4
2,204,319 + HP15_2105 0.17 +0.4
2,204,326 - HP15_2105 0.18 -0.9
2,204,582 + HP15_2105 0.32 -0.3
2,204,597 - HP15_2105 0.32 +1.7
2,204,599 + HP15_2105 0.33 -0.3
2,204,602 - HP15_2105 0.33 +1.3
2,204,602 - HP15_2105 0.33 -0.2
2,204,612 + HP15_2105 0.33 +1.6
2,204,620 - HP15_2105 0.34 -1.1
2,204,743 - HP15_2105 0.40 -1.1

Or see this region's nucleotide sequence