Experiment: monoculture; Experiment C, time point 6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1987 and HP15_1988 overlap by 2 nucleotides HP15_1988 and HP15_1989 overlap by 4 nucleotides HP15_1989 and HP15_1990 overlap by 1 nucleotides HP15_1990 and HP15_1991 overlap by 4 nucleotides HP15_1991 and HP15_1992 are separated by 3 nucleotides HP15_1992 and HP15_1993 are separated by 77 nucleotides
HP15_1987: HP15_1987 - hypothetical protein, at 2,098,796 to 2,098,936
_1987
HP15_1988: HP15_1988 - hypothetical protein, at 2,098,935 to 2,099,276
_1988
HP15_1989: HP15_1989 - hypothetical protein, at 2,099,273 to 2,099,584
_1989
HP15_1990: HP15_1990 - hypothetical protein, at 2,099,584 to 2,099,829
_1990
HP15_1991: HP15_1991 - conserved hypothetical protein, at 2,099,826 to 2,100,191
_1991
HP15_1992: HP15_1992 - conserved hypothetical protein, at 2,100,195 to 2,101,061
_1992
HP15_1993: HP15_1993 - exonuclease RNase T and DNA polymerase III, at 2,101,139 to 2,101,711
_1993
Position (kb)
2099
2100
2101 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 2098.863 kb on - strand, within HP15_1987 at 2099.046 kb on + strand, within HP15_1988 at 2099.046 kb on + strand, within HP15_1988 at 2099.054 kb on - strand, within HP15_1988 at 2099.056 kb on + strand, within HP15_1988 at 2099.091 kb on + strand, within HP15_1988 at 2099.106 kb on + strand, within HP15_1988 at 2099.109 kb on - strand, within HP15_1988 at 2099.109 kb on - strand, within HP15_1988 at 2099.114 kb on - strand, within HP15_1988 at 2099.124 kb on - strand, within HP15_1988 at 2099.138 kb on - strand, within HP15_1988 at 2099.138 kb on - strand, within HP15_1988 at 2099.226 kb on - strand, within HP15_1988 at 2099.232 kb on - strand, within HP15_1988 at 2099.241 kb on - strand, within HP15_1988 at 2099.270 kb on - strand at 2099.278 kb on - strand at 2099.649 kb on - strand, within HP15_1990 at 2099.741 kb on - strand, within HP15_1990 at 2099.741 kb on - strand, within HP15_1990 at 2099.787 kb on - strand, within HP15_1990 at 2099.799 kb on - strand, within HP15_1990 at 2099.853 kb on - strand at 2099.943 kb on - strand, within HP15_1991 at 2099.953 kb on - strand, within HP15_1991 at 2099.953 kb on - strand, within HP15_1991 at 2100.006 kb on - strand, within HP15_1991 at 2100.218 kb on + strand at 2100.239 kb on + strand at 2100.262 kb on - strand at 2100.305 kb on + strand, within HP15_1992 at 2100.442 kb on - strand, within HP15_1992 at 2100.442 kb on - strand, within HP15_1992 at 2100.442 kb on - strand, within HP15_1992 at 2100.519 kb on - strand, within HP15_1992 at 2100.529 kb on + strand, within HP15_1992 at 2100.580 kb on + strand, within HP15_1992 at 2100.615 kb on - strand, within HP15_1992 at 2100.670 kb on - strand, within HP15_1992 at 2100.691 kb on + strand, within HP15_1992 at 2100.848 kb on - strand, within HP15_1992 at 2100.894 kb on - strand, within HP15_1992 at 2101.014 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 6 remove 2,098,863 - HP15_1987 0.48 -1.1 2,099,046 + HP15_1988 0.32 -4.2 2,099,046 + HP15_1988 0.32 -2.9 2,099,054 - HP15_1988 0.35 -0.5 2,099,056 + HP15_1988 0.35 -3.7 2,099,091 + HP15_1988 0.46 -2.9 2,099,106 + HP15_1988 0.50 +0.5 2,099,109 - HP15_1988 0.51 +0.2 2,099,109 - HP15_1988 0.51 -0.6 2,099,114 - HP15_1988 0.52 +1.7 2,099,124 - HP15_1988 0.55 -0.7 2,099,138 - HP15_1988 0.59 +0.0 2,099,138 - HP15_1988 0.59 +2.3 2,099,226 - HP15_1988 0.85 -0.8 2,099,232 - HP15_1988 0.87 -0.4 2,099,241 - HP15_1988 0.89 -0.2 2,099,270 - -0.6 2,099,278 - -3.0 2,099,649 - HP15_1990 0.26 +1.2 2,099,741 - HP15_1990 0.64 -0.5 2,099,741 - HP15_1990 0.64 +0.2 2,099,787 - HP15_1990 0.83 -1.3 2,099,799 - HP15_1990 0.87 +1.1 2,099,853 - -2.3 2,099,943 - HP15_1991 0.32 -0.2 2,099,953 - HP15_1991 0.35 -1.4 2,099,953 - HP15_1991 0.35 -2.4 2,100,006 - HP15_1991 0.49 -1.1 2,100,218 + -1.2 2,100,239 + +0.0 2,100,262 - +0.1 2,100,305 + HP15_1992 0.13 +1.7 2,100,442 - HP15_1992 0.28 +0.2 2,100,442 - HP15_1992 0.28 +0.1 2,100,442 - HP15_1992 0.28 +1.9 2,100,519 - HP15_1992 0.37 -2.0 2,100,529 + HP15_1992 0.39 -3.7 2,100,580 + HP15_1992 0.44 -3.3 2,100,615 - HP15_1992 0.48 +0.1 2,100,670 - HP15_1992 0.55 -0.8 2,100,691 + HP15_1992 0.57 -2.2 2,100,848 - HP15_1992 0.75 -0.4 2,100,894 - HP15_1992 0.81 +0.0 2,101,014 - -2.7
Or see this region's nucleotide sequence