Experiment: monoculture; Experiment C, time point 6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_200 and HP15_201 are separated by 89 nucleotides HP15_201 and HP15_202 overlap by 4 nucleotides HP15_202 and HP15_203 are separated by 4 nucleotides
HP15_200: HP15_200 - peptide ABC transporter, periplasmic peptide-binding protein, at 186,877 to 188,472
_200
HP15_201: HP15_201 - peptide transport system permease ABC transporter protein, at 188,562 to 189,599
_201
HP15_202: HP15_202 - oligopeptide/dipeptide ABC transporter, permease protein, at 189,596 to 190,528
_202
HP15_203: HP15_203 - oligopeptide/dipeptide ABC transporter, ATPase subunit, at 190,533 to 191,531
_203
Position (kb) 188
189
190 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 187.756 kb on - strand, within HP15_200 at 187.895 kb on + strand, within HP15_200 at 187.902 kb on - strand, within HP15_200 at 187.929 kb on + strand, within HP15_200 at 187.937 kb on - strand, within HP15_200 at 187.947 kb on + strand, within HP15_200 at 188.072 kb on - strand, within HP15_200 at 188.096 kb on - strand, within HP15_200 at 188.100 kb on + strand, within HP15_200 at 188.100 kb on + strand, within HP15_200 at 188.103 kb on - strand, within HP15_200 at 188.161 kb on + strand, within HP15_200 at 188.219 kb on + strand, within HP15_200 at 188.224 kb on + strand, within HP15_200 at 188.232 kb on - strand, within HP15_200 at 188.232 kb on - strand, within HP15_200 at 188.232 kb on - strand, within HP15_200 at 188.309 kb on - strand, within HP15_200 at 188.309 kb on - strand, within HP15_200 at 188.375 kb on + strand at 188.383 kb on - strand at 188.441 kb on + strand at 188.449 kb on - strand at 188.501 kb on - strand at 188.538 kb on - strand at 188.552 kb on - strand at 188.634 kb on + strand at 188.658 kb on + strand at 188.684 kb on + strand, within HP15_201 at 188.956 kb on - strand, within HP15_201 at 189.013 kb on + strand, within HP15_201 at 189.013 kb on - strand, within HP15_201 at 189.021 kb on - strand, within HP15_201 at 189.166 kb on + strand, within HP15_201 at 189.166 kb on + strand, within HP15_201 at 189.174 kb on - strand, within HP15_201 at 189.174 kb on - strand, within HP15_201 at 189.221 kb on + strand, within HP15_201 at 189.239 kb on + strand, within HP15_201 at 189.293 kb on + strand, within HP15_201 at 189.325 kb on - strand, within HP15_201 at 189.338 kb on + strand, within HP15_201 at 189.344 kb on - strand, within HP15_201 at 189.393 kb on - strand, within HP15_201 at 189.441 kb on + strand, within HP15_201 at 189.504 kb on - strand at 189.556 kb on + strand at 189.568 kb on - strand at 189.571 kb on - strand at 189.766 kb on + strand, within HP15_202 at 189.774 kb on - strand, within HP15_202 at 189.774 kb on - strand, within HP15_202 at 189.859 kb on + strand, within HP15_202 at 189.984 kb on - strand, within HP15_202 at 190.057 kb on + strand, within HP15_202 at 190.057 kb on + strand, within HP15_202 at 190.065 kb on - strand, within HP15_202 at 190.065 kb on - strand, within HP15_202 at 190.138 kb on + strand, within HP15_202 at 190.157 kb on + strand, within HP15_202 at 190.300 kb on - strand, within HP15_202 at 190.375 kb on - strand, within HP15_202 at 190.421 kb on - strand, within HP15_202 at 190.506 kb on + strand at 190.506 kb on + strand at 190.523 kb on + strand at 190.524 kb on - strand at 190.531 kb on + strand at 190.531 kb on - strand at 190.539 kb on - strand at 190.582 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 6 remove 187,756 - HP15_200 0.55 -1.0 187,895 + HP15_200 0.64 -3.0 187,902 - HP15_200 0.64 +1.5 187,929 + HP15_200 0.66 -0.5 187,937 - HP15_200 0.66 +1.5 187,947 + HP15_200 0.67 -0.5 188,072 - HP15_200 0.75 -2.8 188,096 - HP15_200 0.76 -0.1 188,100 + HP15_200 0.77 -0.3 188,100 + HP15_200 0.77 -0.8 188,103 - HP15_200 0.77 -0.7 188,161 + HP15_200 0.80 -1.8 188,219 + HP15_200 0.84 +0.6 188,224 + HP15_200 0.84 +1.9 188,232 - HP15_200 0.85 -1.0 188,232 - HP15_200 0.85 -0.1 188,232 - HP15_200 0.85 +0.6 188,309 - HP15_200 0.90 +1.8 188,309 - HP15_200 0.90 -0.4 188,375 + +1.9 188,383 - +0.2 188,441 + +1.6 188,449 - -0.3 188,501 - +0.9 188,538 - +0.1 188,552 - -0.6 188,634 + +1.8 188,658 + -1.0 188,684 + HP15_201 0.12 +1.0 188,956 - HP15_201 0.38 +0.3 189,013 + HP15_201 0.43 -1.4 189,013 - HP15_201 0.43 -1.6 189,021 - HP15_201 0.44 -0.7 189,166 + HP15_201 0.58 -1.2 189,166 + HP15_201 0.58 -0.9 189,174 - HP15_201 0.59 -0.5 189,174 - HP15_201 0.59 +0.9 189,221 + HP15_201 0.63 -0.4 189,239 + HP15_201 0.65 -1.3 189,293 + HP15_201 0.70 -0.5 189,325 - HP15_201 0.74 -1.4 189,338 + HP15_201 0.75 -0.5 189,344 - HP15_201 0.75 -0.9 189,393 - HP15_201 0.80 +0.7 189,441 + HP15_201 0.85 +0.1 189,504 - -1.5 189,556 + -2.3 189,568 - +0.4 189,571 - -1.2 189,766 + HP15_202 0.18 -0.7 189,774 - HP15_202 0.19 +0.4 189,774 - HP15_202 0.19 -0.8 189,859 + HP15_202 0.28 -0.6 189,984 - HP15_202 0.42 -0.4 190,057 + HP15_202 0.49 +1.1 190,057 + HP15_202 0.49 -0.7 190,065 - HP15_202 0.50 +1.1 190,065 - HP15_202 0.50 -0.7 190,138 + HP15_202 0.58 -1.6 190,157 + HP15_202 0.60 -0.6 190,300 - HP15_202 0.75 -1.0 190,375 - HP15_202 0.83 +2.1 190,421 - HP15_202 0.88 -1.1 190,506 + +1.9 190,506 + -0.6 190,523 + +2.0 190,524 - +1.8 190,531 + +0.1 190,531 - -1.0 190,539 - -0.6 190,582 + +1.2
Or see this region's nucleotide sequence