Strain Fitness in Marinobacter adhaerens HP15 around HP15_1928
Experiment: monoculture; Experiment C, time point 6
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | monoculture; Experiment C, time point 6 |
---|---|---|---|---|---|
remove | |||||
2,044,002 | - | HP15_1927 | 0.20 | +0.1 | |
2,044,013 | - | HP15_1927 | 0.21 | -0.4 | |
2,044,058 | + | HP15_1927 | 0.25 | +0.3 | |
2,044,067 | - | HP15_1927 | 0.26 | -0.2 | |
2,044,117 | - | HP15_1927 | 0.30 | -0.3 | |
2,044,229 | - | HP15_1927 | 0.41 | +1.8 | |
2,044,274 | - | HP15_1927 | 0.45 | -2.1 | |
2,044,292 | - | HP15_1927 | 0.47 | -0.8 | |
2,044,359 | + | HP15_1927 | 0.54 | +2.0 | |
2,044,377 | + | HP15_1927 | 0.55 | -0.2 | |
2,044,438 | + | HP15_1927 | 0.61 | -1.7 | |
2,044,659 | + | HP15_1927 | 0.82 | -0.0 | |
2,044,677 | - | HP15_1927 | 0.84 | -0.3 | |
2,044,865 | + | +0.3 | |||
2,044,880 | - | -0.1 | |||
2,045,230 | + | HP15_1928 | 0.24 | -0.2 | |
2,045,736 | - | HP15_1928 | 0.58 | -0.4 | |
2,045,760 | + | HP15_1928 | 0.60 | +1.2 | |
2,045,913 | - | HP15_1928 | 0.70 | +3.2 | |
2,045,960 | - | HP15_1928 | 0.73 | +2.2 | |
2,046,094 | + | HP15_1928 | 0.82 | -0.2 | |
2,046,104 | + | HP15_1928 | 0.83 | +0.9 | |
2,046,188 | + | HP15_1928 | 0.88 | -2.2 | |
2,046,212 | - | +1.3 | |||
2,046,214 | + | +1.5 | |||
2,046,252 | + | +0.4 | |||
2,046,252 | + | +1.5 | |||
2,046,260 | - | +1.2 | |||
2,046,260 | - | -0.4 | |||
2,046,413 | - | +1.4 |
Or see this region's nucleotide sequence