Experiment: monoculture; Experiment C, time point 6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1911 and HP15_1912 are separated by 423 nucleotides HP15_1912 and HP15_1913 are separated by 7 nucleotides
HP15_1911: HP15_1911 - beta 1,4-N-acetylgalactosaminyltransferase-transferase-III-like protein, at 2,023,179 to 2,025,203
_1911
HP15_1912: HP15_1912 - polysaccharide biosynthesis protein, at 2,025,627 to 2,026,790
_1912
HP15_1913: HP15_1913 - glycosyltransferase, at 2,026,798 to 2,027,919
_1913
Position (kb)
2025
2026
2027 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 2024.663 kb on - strand, within HP15_1911 at 2024.751 kb on + strand, within HP15_1911 at 2024.773 kb on - strand, within HP15_1911 at 2024.813 kb on - strand, within HP15_1911 at 2025.078 kb on - strand at 2025.098 kb on + strand at 2025.177 kb on - strand at 2025.439 kb on - strand at 2025.522 kb on + strand at 2025.522 kb on + strand at 2025.534 kb on + strand at 2025.544 kb on + strand at 2025.643 kb on - strand at 2025.707 kb on - strand at 2025.783 kb on + strand, within HP15_1912 at 2025.791 kb on - strand, within HP15_1912 at 2025.813 kb on + strand, within HP15_1912 at 2025.927 kb on + strand, within HP15_1912 at 2025.946 kb on + strand, within HP15_1912 at 2026.018 kb on + strand, within HP15_1912 at 2026.036 kb on - strand, within HP15_1912 at 2026.052 kb on + strand, within HP15_1912 at 2026.060 kb on - strand, within HP15_1912 at 2026.278 kb on - strand, within HP15_1912 at 2026.488 kb on - strand, within HP15_1912 at 2026.682 kb on + strand at 2026.687 kb on + strand at 2026.813 kb on - strand at 2026.826 kb on + strand at 2026.916 kb on - strand, within HP15_1913 at 2027.022 kb on - strand, within HP15_1913 at 2027.048 kb on + strand, within HP15_1913 at 2027.124 kb on - strand, within HP15_1913 at 2027.133 kb on - strand, within HP15_1913 at 2027.148 kb on + strand, within HP15_1913 at 2027.296 kb on - strand, within HP15_1913 at 2027.350 kb on + strand, within HP15_1913 at 2027.355 kb on + strand, within HP15_1913 at 2027.358 kb on - strand, within HP15_1913 at 2027.399 kb on - strand, within HP15_1913 at 2027.491 kb on + strand, within HP15_1913 at 2027.501 kb on - strand, within HP15_1913 at 2027.506 kb on - strand, within HP15_1913 at 2027.542 kb on - strand at 2027.617 kb on + strand, within HP15_1913 at 2027.625 kb on - strand, within HP15_1913 at 2027.652 kb on - strand, within HP15_1913 at 2027.726 kb on - strand, within HP15_1913
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 6 remove 2,024,663 - HP15_1911 0.73 +1.1 2,024,751 + HP15_1911 0.78 +0.9 2,024,773 - HP15_1911 0.79 +1.6 2,024,813 - HP15_1911 0.81 +1.8 2,025,078 - +0.8 2,025,098 + -0.1 2,025,177 - +1.7 2,025,439 - +1.0 2,025,522 + +0.1 2,025,522 + -1.8 2,025,534 + -0.2 2,025,544 + -0.9 2,025,643 - -3.2 2,025,707 - -1.2 2,025,783 + HP15_1912 0.13 -0.5 2,025,791 - HP15_1912 0.14 +0.8 2,025,813 + HP15_1912 0.16 +0.4 2,025,927 + HP15_1912 0.26 -1.7 2,025,946 + HP15_1912 0.27 +1.2 2,026,018 + HP15_1912 0.34 -1.3 2,026,036 - HP15_1912 0.35 +3.9 2,026,052 + HP15_1912 0.37 -0.6 2,026,060 - HP15_1912 0.37 +1.4 2,026,278 - HP15_1912 0.56 -1.5 2,026,488 - HP15_1912 0.74 -2.4 2,026,682 + -1.2 2,026,687 + +0.2 2,026,813 - -0.6 2,026,826 + -0.2 2,026,916 - HP15_1913 0.11 -0.8 2,027,022 - HP15_1913 0.20 +0.9 2,027,048 + HP15_1913 0.22 -1.2 2,027,124 - HP15_1913 0.29 +0.9 2,027,133 - HP15_1913 0.30 -0.1 2,027,148 + HP15_1913 0.31 +0.3 2,027,296 - HP15_1913 0.44 -1.7 2,027,350 + HP15_1913 0.49 -0.4 2,027,355 + HP15_1913 0.50 -1.7 2,027,358 - HP15_1913 0.50 -1.9 2,027,399 - HP15_1913 0.54 -0.3 2,027,491 + HP15_1913 0.62 -0.7 2,027,501 - HP15_1913 0.63 -2.0 2,027,506 - HP15_1913 0.63 +0.2 2,027,542 - -0.5 2,027,617 + HP15_1913 0.73 -0.9 2,027,625 - HP15_1913 0.74 +0.0 2,027,652 - HP15_1913 0.76 -0.1 2,027,726 - HP15_1913 0.83 +0.1
Or see this region's nucleotide sequence