Experiment: monoculture; Experiment C, time point 6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1905 and HP15_1906 are separated by 1 nucleotides HP15_1906 and HP15_1907 are separated by 1 nucleotides
HP15_1905: HP15_1905 - conserved hypothetical protein, at 2,014,616 to 2,017,165
_1905
HP15_1906: HP15_1906 - acetyltransferase-like protein, at 2,017,167 to 2,017,787
_1906
HP15_1907: HP15_1907 - coenzyme F390 synthetase-like protein, at 2,017,789 to 2,019,153
_1907
Position (kb)
2017
2018 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2 at 2016.195 kb on + strand, within HP15_1905 at 2016.195 kb on + strand, within HP15_1905 at 2016.195 kb on + strand, within HP15_1905 at 2016.195 kb on + strand, within HP15_1905 at 2016.203 kb on - strand, within HP15_1905 at 2016.203 kb on - strand, within HP15_1905 at 2016.406 kb on + strand, within HP15_1905 at 2016.567 kb on + strand, within HP15_1905 at 2016.615 kb on - strand, within HP15_1905 at 2016.620 kb on - strand, within HP15_1905 at 2016.620 kb on - strand, within HP15_1905 at 2016.688 kb on - strand, within HP15_1905 at 2016.700 kb on - strand, within HP15_1905 at 2016.700 kb on - strand, within HP15_1905 at 2016.704 kb on + strand, within HP15_1905 at 2016.916 kb on - strand at 2017.012 kb on - strand at 2017.040 kb on + strand at 2017.064 kb on - strand at 2017.432 kb on + strand, within HP15_1906 at 2017.501 kb on + strand, within HP15_1906 at 2017.553 kb on - strand, within HP15_1906 at 2017.657 kb on - strand, within HP15_1906 at 2017.662 kb on - strand, within HP15_1906 at 2017.662 kb on - strand, within HP15_1906 at 2017.672 kb on - strand, within HP15_1906 at 2017.674 kb on + strand, within HP15_1906 at 2017.674 kb on + strand, within HP15_1906 at 2017.692 kb on - strand, within HP15_1906 at 2017.750 kb on - strand at 2017.843 kb on + strand at 2017.882 kb on - strand at 2017.913 kb on - strand at 2017.940 kb on - strand, within HP15_1907 at 2018.110 kb on - strand, within HP15_1907 at 2018.130 kb on + strand, within HP15_1907 at 2018.191 kb on + strand, within HP15_1907 at 2018.191 kb on + strand, within HP15_1907 at 2018.191 kb on + strand, within HP15_1907 at 2018.196 kb on + strand, within HP15_1907 at 2018.196 kb on + strand, within HP15_1907 at 2018.340 kb on + strand, within HP15_1907
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 6 remove 2,016,195 + HP15_1905 0.62 -1.0 2,016,195 + HP15_1905 0.62 +0.9 2,016,195 + HP15_1905 0.62 -0.1 2,016,195 + HP15_1905 0.62 +0.2 2,016,203 - HP15_1905 0.62 -1.6 2,016,203 - HP15_1905 0.62 -0.2 2,016,406 + HP15_1905 0.70 +0.7 2,016,567 + HP15_1905 0.77 -0.3 2,016,615 - HP15_1905 0.78 -0.0 2,016,620 - HP15_1905 0.79 +1.8 2,016,620 - HP15_1905 0.79 -0.5 2,016,688 - HP15_1905 0.81 +0.1 2,016,700 - HP15_1905 0.82 -0.1 2,016,700 - HP15_1905 0.82 +1.1 2,016,704 + HP15_1905 0.82 -0.3 2,016,916 - -0.9 2,017,012 - -1.2 2,017,040 + +0.4 2,017,064 - -0.9 2,017,432 + HP15_1906 0.43 -2.4 2,017,501 + HP15_1906 0.54 -0.7 2,017,553 - HP15_1906 0.62 -0.5 2,017,657 - HP15_1906 0.79 -1.1 2,017,662 - HP15_1906 0.80 -2.2 2,017,662 - HP15_1906 0.80 +0.2 2,017,672 - HP15_1906 0.81 +1.5 2,017,674 + HP15_1906 0.82 +1.7 2,017,674 + HP15_1906 0.82 +0.2 2,017,692 - HP15_1906 0.85 -0.0 2,017,750 - -0.7 2,017,843 + -1.3 2,017,882 - -3.2 2,017,913 - -4.9 2,017,940 - HP15_1907 0.11 -4.4 2,018,110 - HP15_1907 0.24 -3.7 2,018,130 + HP15_1907 0.25 -5.1 2,018,191 + HP15_1907 0.29 -2.7 2,018,191 + HP15_1907 0.29 -4.5 2,018,191 + HP15_1907 0.29 -3.6 2,018,196 + HP15_1907 0.30 -4.3 2,018,196 + HP15_1907 0.30 -3.5 2,018,340 + HP15_1907 0.40 -0.7
Or see this region's nucleotide sequence