Strain Fitness in Marinobacter adhaerens HP15 around HP15_1874
Experiment: monoculture; Experiment C, time point 6
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | monoculture; Experiment C, time point 6 |
---|---|---|---|---|---|
remove | |||||
1,979,413 | + | HP15_1873 | 0.53 | +1.2 | |
1,979,417 | + | HP15_1873 | 0.53 | -1.9 | |
1,979,492 | - | HP15_1873 | 0.58 | -0.3 | |
1,979,492 | - | HP15_1873 | 0.58 | -0.2 | |
1,979,585 | - | HP15_1873 | 0.65 | +0.4 | |
1,979,824 | - | HP15_1873 | 0.82 | -0.4 | |
1,979,829 | - | HP15_1873 | 0.82 | -3.0 | |
1,979,925 | + | HP15_1873 | 0.89 | +0.3 | |
1,980,189 | - | HP15_1874 | 0.22 | -1.5 | |
1,980,434 | + | HP15_1874 | 0.72 | -1.3 | |
1,980,453 | + | HP15_1874 | 0.76 | -0.4 | |
1,980,564 | + | -0.6 | |||
1,980,599 | - | +2.0 | |||
1,980,629 | + | -0.7 | |||
1,980,630 | + | +1.3 | |||
1,980,703 | - | +0.9 | |||
1,980,703 | - | +0.9 | |||
1,980,957 | + | +0.4 | |||
1,981,030 | + | -0.5 | |||
1,981,140 | - | HP15_1875 | 0.14 | +1.6 | |
1,981,423 | + | HP15_1875 | 0.39 | +0.6 | |
1,981,467 | + | HP15_1875 | 0.43 | +2.0 | |
1,981,475 | - | HP15_1875 | 0.43 | -1.0 |
Or see this region's nucleotide sequence