Experiment: monoculture; Experiment C, time point 6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_187 and HP15_188 are separated by 129 nucleotides HP15_188 and HP15_189 are separated by 15 nucleotides HP15_189 and HP15_190 are separated by 240 nucleotides HP15_190 and HP15_191 are separated by 290 nucleotides
HP15_187: HP15_187 - conserved hypothetical protein, secreted, at 177,759 to 178,142
_187
HP15_188: HP15_188 - plasmid pTOM9 ORF1-like protein, at 178,272 to 178,925
_188
HP15_189: HP15_189 - plasmidpTOM9-like protein, at 178,941 to 179,636
_189
HP15_190: HP15_190 - protein containing methyltransferase type 12 domain, at 179,877 to 180,323
_190
HP15_191: HP15_191 - Hg(II)--responsive transcriptional regulator, at 180,614 to 181,048
_191
Position (kb) 178
179
180 Strain fitness (log2 ratio) -1
0
1
2
3 at 177.962 kb on + strand, within HP15_187 at 177.964 kb on + strand, within HP15_187 at 178.016 kb on + strand, within HP15_187 at 178.051 kb on + strand, within HP15_187 at 178.181 kb on - strand at 178.253 kb on + strand at 178.283 kb on - strand at 178.320 kb on - strand at 178.360 kb on + strand, within HP15_188 at 178.496 kb on - strand, within HP15_188 at 178.583 kb on + strand, within HP15_188 at 178.590 kb on + strand, within HP15_188 at 178.629 kb on - strand, within HP15_188 at 178.678 kb on + strand, within HP15_188 at 178.686 kb on - strand, within HP15_188 at 178.734 kb on - strand, within HP15_188 at 178.747 kb on + strand, within HP15_188 at 178.863 kb on + strand at 178.863 kb on + strand at 178.863 kb on + strand at 178.956 kb on + strand at 179.036 kb on + strand, within HP15_189 at 179.076 kb on - strand, within HP15_189 at 179.163 kb on + strand, within HP15_189 at 179.176 kb on - strand, within HP15_189 at 179.183 kb on + strand, within HP15_189 at 179.191 kb on - strand, within HP15_189 at 179.191 kb on - strand, within HP15_189 at 179.285 kb on + strand, within HP15_189 at 179.293 kb on - strand, within HP15_189 at 179.418 kb on + strand, within HP15_189 at 179.424 kb on - strand, within HP15_189 at 179.424 kb on - strand, within HP15_189 at 179.441 kb on + strand, within HP15_189 at 179.537 kb on - strand, within HP15_189 at 179.592 kb on - strand at 179.609 kb on - strand at 179.648 kb on - strand at 179.700 kb on - strand at 179.769 kb on + strand at 179.787 kb on - strand at 179.834 kb on - strand at 179.901 kb on + strand at 179.953 kb on + strand, within HP15_190 at 179.954 kb on - strand, within HP15_190 at 180.046 kb on - strand, within HP15_190 at 180.208 kb on - strand, within HP15_190 at 180.215 kb on + strand, within HP15_190 at 180.222 kb on - strand, within HP15_190 at 180.237 kb on + strand, within HP15_190 at 180.296 kb on + strand at 180.296 kb on + strand at 180.316 kb on - strand at 180.322 kb on + strand at 180.504 kb on - strand at 180.594 kb on - strand at 180.605 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 6 remove 177,962 + HP15_187 0.53 +3.0 177,964 + HP15_187 0.53 +1.2 178,016 + HP15_187 0.67 -0.4 178,051 + HP15_187 0.76 -0.4 178,181 - -0.0 178,253 + -0.2 178,283 - +0.8 178,320 - +1.2 178,360 + HP15_188 0.13 -0.5 178,496 - HP15_188 0.34 +0.8 178,583 + HP15_188 0.48 +2.6 178,590 + HP15_188 0.49 +0.5 178,629 - HP15_188 0.55 -0.7 178,678 + HP15_188 0.62 +1.8 178,686 - HP15_188 0.63 +2.9 178,734 - HP15_188 0.71 -0.4 178,747 + HP15_188 0.73 +2.4 178,863 + +3.3 178,863 + -0.2 178,863 + +0.8 178,956 + +2.3 179,036 + HP15_189 0.14 -0.2 179,076 - HP15_189 0.19 -0.5 179,163 + HP15_189 0.32 +0.1 179,176 - HP15_189 0.34 +0.3 179,183 + HP15_189 0.35 +0.1 179,191 - HP15_189 0.36 -0.1 179,191 - HP15_189 0.36 -1.0 179,285 + HP15_189 0.49 -1.3 179,293 - HP15_189 0.51 -0.9 179,418 + HP15_189 0.69 +0.8 179,424 - HP15_189 0.69 +0.9 179,424 - HP15_189 0.69 +1.4 179,441 + HP15_189 0.72 +0.3 179,537 - HP15_189 0.86 -1.0 179,592 - -1.7 179,609 - -0.5 179,648 - +1.2 179,700 - -0.2 179,769 + +2.8 179,787 - -1.1 179,834 - -0.6 179,901 + -0.8 179,953 + HP15_190 0.17 -1.1 179,954 - HP15_190 0.17 +1.7 180,046 - HP15_190 0.38 -0.4 180,208 - HP15_190 0.74 -0.6 180,215 + HP15_190 0.76 +0.8 180,222 - HP15_190 0.77 +1.1 180,237 + HP15_190 0.81 +0.1 180,296 + -1.4 180,296 + +0.1 180,316 - +1.8 180,322 + -0.7 180,504 - +0.3 180,594 - -1.2 180,605 + -0.3
Or see this region's nucleotide sequence