Experiment: monoculture; Experiment C, time point 6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_168 and HP15_169 are separated by 87 nucleotides HP15_169 and HP15_171 are separated by 230 nucleotides HP15_171 and HP15_170 are separated by 45 nucleotides HP15_170 and HP15_172 are separated by 41 nucleotides HP15_172 and HP15_173 overlap by 17 nucleotides HP15_173 and HP15_174 are separated by 202 nucleotides
HP15_168: HP15_168 - conserved hypothetical protein, at 163,409 to 163,513
_168
HP15_169: HP15_169 - hypothetical protein, at 163,601 to 163,714
_169
HP15_171: HP15_171 - cytochrome c, class I-like protein, at 163,945 to 164,073
_171
HP15_170: HP15_170 - hypothetical protein, at 164,119 to 164,322
_170
HP15_172: HP15_172 - protein-S-isoprenylcysteine methyltransferase, at 164,364 to 165,032
_172
HP15_173: HP15_173 - secreted protein, at 165,016 to 165,189
_173
HP15_174: HP15_174 - conserved hypothetical protein, at 165,392 to 166,684
_174
Position (kb) 164
165
166 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 163.459 kb on + strand, within HP15_168 at 163.460 kb on + strand, within HP15_168 at 163.471 kb on + strand, within HP15_168 at 163.471 kb on + strand, within HP15_168 at 163.471 kb on + strand, within HP15_168 at 163.478 kb on + strand, within HP15_168 at 163.478 kb on - strand, within HP15_168 at 163.508 kb on + strand at 163.516 kb on - strand at 163.562 kb on + strand at 163.562 kb on + strand at 163.562 kb on + strand at 163.570 kb on - strand at 163.570 kb on - strand at 163.606 kb on + strand at 163.829 kb on - strand at 163.897 kb on - strand at 163.967 kb on - strand, within HP15_171 at 164.008 kb on + strand, within HP15_171 at 164.030 kb on + strand, within HP15_171 at 164.038 kb on - strand, within HP15_171 at 164.038 kb on - strand, within HP15_171 at 164.038 kb on - strand, within HP15_171 at 164.128 kb on + strand at 164.141 kb on - strand, within HP15_170 at 164.242 kb on + strand, within HP15_170 at 164.255 kb on - strand, within HP15_170 at 164.258 kb on + strand, within HP15_170 at 164.264 kb on + strand, within HP15_170 at 164.264 kb on + strand, within HP15_170 at 164.266 kb on + strand, within HP15_170 at 164.269 kb on + strand, within HP15_170 at 164.272 kb on - strand, within HP15_170 at 164.272 kb on - strand, within HP15_170 at 164.274 kb on + strand, within HP15_170 at 164.276 kb on + strand, within HP15_170 at 164.282 kb on - strand, within HP15_170 at 164.291 kb on + strand, within HP15_170 at 164.295 kb on - strand, within HP15_170 at 164.432 kb on - strand, within HP15_172 at 164.514 kb on - strand, within HP15_172 at 164.543 kb on + strand, within HP15_172 at 164.543 kb on + strand, within HP15_172 at 164.543 kb on + strand, within HP15_172 at 164.543 kb on + strand, within HP15_172 at 164.543 kb on + strand, within HP15_172 at 164.551 kb on - strand, within HP15_172 at 164.551 kb on - strand, within HP15_172 at 164.561 kb on - strand, within HP15_172 at 164.656 kb on + strand, within HP15_172 at 164.664 kb on - strand, within HP15_172 at 164.675 kb on - strand, within HP15_172 at 164.703 kb on + strand, within HP15_172 at 164.759 kb on - strand, within HP15_172 at 164.787 kb on + strand, within HP15_172 at 164.787 kb on + strand, within HP15_172 at 164.820 kb on + strand, within HP15_172 at 164.939 kb on - strand, within HP15_172 at 165.036 kb on + strand, within HP15_173 at 165.044 kb on - strand, within HP15_173 at 165.044 kb on - strand, within HP15_173 at 165.057 kb on + strand, within HP15_173 at 165.076 kb on + strand, within HP15_173 at 165.084 kb on - strand, within HP15_173 at 165.096 kb on - strand, within HP15_173 at 165.135 kb on - strand, within HP15_173 at 165.135 kb on - strand, within HP15_173 at 165.167 kb on + strand, within HP15_173 at 165.174 kb on + strand at 165.184 kb on + strand at 165.184 kb on + strand at 165.185 kb on + strand at 165.193 kb on - strand at 165.193 kb on - strand at 165.298 kb on - strand at 165.305 kb on - strand at 165.311 kb on - strand at 165.377 kb on + strand at 165.425 kb on + strand at 165.433 kb on - strand at 165.478 kb on - strand at 165.479 kb on - strand at 165.551 kb on - strand, within HP15_174 at 165.646 kb on + strand, within HP15_174 at 165.676 kb on - strand, within HP15_174 at 165.676 kb on - strand, within HP15_174 at 165.712 kb on + strand, within HP15_174 at 165.764 kb on - strand, within HP15_174 at 165.809 kb on + strand, within HP15_174 at 165.809 kb on + strand, within HP15_174 at 165.817 kb on - strand, within HP15_174 at 165.822 kb on - strand, within HP15_174 at 165.834 kb on + strand, within HP15_174 at 165.842 kb on - strand, within HP15_174 at 165.842 kb on - strand, within HP15_174 at 165.862 kb on + strand, within HP15_174 at 165.867 kb on + strand, within HP15_174 at 165.933 kb on + strand, within HP15_174 at 165.962 kb on + strand, within HP15_174
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 6 remove 163,459 + HP15_168 0.48 -1.1 163,460 + HP15_168 0.49 -0.8 163,471 + HP15_168 0.59 +0.8 163,471 + HP15_168 0.59 +0.8 163,471 + HP15_168 0.59 -0.5 163,478 + HP15_168 0.66 -1.0 163,478 - HP15_168 0.66 +0.9 163,508 + +3.0 163,516 - +0.6 163,562 + -0.3 163,562 + +2.4 163,562 + -0.6 163,570 - +1.0 163,570 - +0.7 163,606 + +1.6 163,829 - +0.2 163,897 - -0.7 163,967 - HP15_171 0.17 -0.2 164,008 + HP15_171 0.49 +0.4 164,030 + HP15_171 0.66 -1.6 164,038 - HP15_171 0.72 +1.4 164,038 - HP15_171 0.72 +1.9 164,038 - HP15_171 0.72 +0.5 164,128 + +1.4 164,141 - HP15_170 0.11 -0.3 164,242 + HP15_170 0.60 -0.9 164,255 - HP15_170 0.67 -0.9 164,258 + HP15_170 0.68 -1.7 164,264 + HP15_170 0.71 -0.0 164,264 + HP15_170 0.71 +0.3 164,266 + HP15_170 0.72 +1.1 164,269 + HP15_170 0.74 +0.8 164,272 - HP15_170 0.75 +1.4 164,272 - HP15_170 0.75 +2.1 164,274 + HP15_170 0.76 +0.8 164,276 + HP15_170 0.77 -0.3 164,282 - HP15_170 0.80 -0.8 164,291 + HP15_170 0.84 -0.8 164,295 - HP15_170 0.86 -0.2 164,432 - HP15_172 0.10 +1.1 164,514 - HP15_172 0.22 -0.8 164,543 + HP15_172 0.27 -0.9 164,543 + HP15_172 0.27 -1.0 164,543 + HP15_172 0.27 -0.7 164,543 + HP15_172 0.27 -0.2 164,543 + HP15_172 0.27 -0.7 164,551 - HP15_172 0.28 +0.2 164,551 - HP15_172 0.28 +0.4 164,561 - HP15_172 0.29 +0.2 164,656 + HP15_172 0.44 +1.8 164,664 - HP15_172 0.45 -1.1 164,675 - HP15_172 0.46 +1.1 164,703 + HP15_172 0.51 -0.1 164,759 - HP15_172 0.59 -0.7 164,787 + HP15_172 0.63 -0.2 164,787 + HP15_172 0.63 +0.2 164,820 + HP15_172 0.68 -0.2 164,939 - HP15_172 0.86 -1.7 165,036 + HP15_173 0.11 +2.1 165,044 - HP15_173 0.16 +0.8 165,044 - HP15_173 0.16 +2.8 165,057 + HP15_173 0.24 +1.8 165,076 + HP15_173 0.34 -0.6 165,084 - HP15_173 0.39 +1.5 165,096 - HP15_173 0.46 +0.7 165,135 - HP15_173 0.68 +0.6 165,135 - HP15_173 0.68 -0.3 165,167 + HP15_173 0.87 -0.6 165,174 + -0.2 165,184 + -1.0 165,184 + +0.2 165,185 + +2.1 165,193 - +1.0 165,193 - -0.3 165,298 - +1.9 165,305 - +1.8 165,311 - -1.1 165,377 + -0.2 165,425 + +0.0 165,433 - +1.2 165,478 - -1.1 165,479 - +0.7 165,551 - HP15_174 0.12 -0.5 165,646 + HP15_174 0.20 -0.1 165,676 - HP15_174 0.22 +0.7 165,676 - HP15_174 0.22 +0.2 165,712 + HP15_174 0.25 -1.5 165,764 - HP15_174 0.29 -1.6 165,809 + HP15_174 0.32 +0.3 165,809 + HP15_174 0.32 -0.8 165,817 - HP15_174 0.33 +1.3 165,822 - HP15_174 0.33 +1.7 165,834 + HP15_174 0.34 -1.7 165,842 - HP15_174 0.35 +0.6 165,842 - HP15_174 0.35 +1.3 165,862 + HP15_174 0.36 -1.0 165,867 + HP15_174 0.37 -1.1 165,933 + HP15_174 0.42 +0.2 165,962 + HP15_174 0.44 -2.2
Or see this region's nucleotide sequence