Experiment: monoculture; Experiment C, time point 6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1326 and HP15_1327 are separated by 84 nucleotides HP15_1327 and HP15_1328 are separated by 196 nucleotides HP15_1328 and HP15_1329 are separated by 106 nucleotides
HP15_1326: HP15_1326 - conserved hypothetical protein, at 1,391,042 to 1,392,823
_1326
HP15_1327: HP15_1327 - hypothetical protein, at 1,392,908 to 1,393,261
_1327
HP15_1328: HP15_1328 - nucleoprotein/polynucleotide-associated enzyme, at 1,393,458 to 1,393,994
_1328
HP15_1329: HP15_1329 - DEAD/DEAH box helicase domain protein, at 1,394,101 to 1,395,474
_1329
Position (kb)
1393
1394 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1392.566 kb on + strand, within HP15_1326 at 1392.732 kb on + strand at 1392.806 kb on + strand at 1392.988 kb on + strand, within HP15_1327 at 1392.990 kb on + strand, within HP15_1327 at 1393.061 kb on + strand, within HP15_1327 at 1393.062 kb on - strand, within HP15_1327 at 1393.092 kb on - strand, within HP15_1327 at 1393.180 kb on - strand, within HP15_1327 at 1393.232 kb on - strand at 1393.445 kb on + strand at 1393.453 kb on - strand at 1393.577 kb on + strand, within HP15_1328 at 1393.733 kb on - strand, within HP15_1328 at 1393.845 kb on + strand, within HP15_1328 at 1393.868 kb on - strand, within HP15_1328 at 1394.165 kb on - strand at 1394.195 kb on - strand at 1394.235 kb on + strand at 1394.289 kb on + strand, within HP15_1329 at 1394.320 kb on + strand, within HP15_1329 at 1394.415 kb on + strand, within HP15_1329 at 1394.415 kb on + strand, within HP15_1329 at 1394.473 kb on + strand, within HP15_1329 at 1394.512 kb on + strand, within HP15_1329 at 1394.535 kb on + strand, within HP15_1329 at 1394.629 kb on + strand, within HP15_1329 at 1394.635 kb on + strand, within HP15_1329 at 1394.662 kb on + strand, within HP15_1329 at 1394.717 kb on - strand, within HP15_1329 at 1394.754 kb on + strand, within HP15_1329 at 1394.889 kb on + strand, within HP15_1329 at 1394.932 kb on + strand, within HP15_1329
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 6 remove 1,392,566 + HP15_1326 0.86 -0.2 1,392,732 + +1.3 1,392,806 + -0.6 1,392,988 + HP15_1327 0.23 +0.6 1,392,990 + HP15_1327 0.23 -1.6 1,393,061 + HP15_1327 0.43 +1.7 1,393,062 - HP15_1327 0.44 -0.2 1,393,092 - HP15_1327 0.52 -2.1 1,393,180 - HP15_1327 0.77 +0.9 1,393,232 - +0.0 1,393,445 + -1.8 1,393,453 - -1.0 1,393,577 + HP15_1328 0.22 -0.1 1,393,733 - HP15_1328 0.51 -0.2 1,393,845 + HP15_1328 0.72 -0.4 1,393,868 - HP15_1328 0.76 -0.8 1,394,165 - -0.2 1,394,195 - -2.4 1,394,235 + -0.3 1,394,289 + HP15_1329 0.14 -1.0 1,394,320 + HP15_1329 0.16 +0.3 1,394,415 + HP15_1329 0.23 +0.3 1,394,415 + HP15_1329 0.23 +2.1 1,394,473 + HP15_1329 0.27 +2.3 1,394,512 + HP15_1329 0.30 +1.5 1,394,535 + HP15_1329 0.32 +2.0 1,394,629 + HP15_1329 0.38 +0.4 1,394,635 + HP15_1329 0.39 +0.5 1,394,662 + HP15_1329 0.41 +0.4 1,394,717 - HP15_1329 0.45 +1.1 1,394,754 + HP15_1329 0.48 +0.9 1,394,889 + HP15_1329 0.57 -0.5 1,394,932 + HP15_1329 0.60 +0.4
Or see this region's nucleotide sequence