Strain Fitness in Marinobacter adhaerens HP15 around HP15_1321

Experiment: monoculture; Experiment C, time point 6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1320 and HP15_1321 are separated by 210 nucleotidesHP15_1321 and HP15_tRNA22 are separated by 126 nucleotidesHP15_tRNA22 and HP15_tRNA23 are separated by 64 nucleotidesHP15_tRNA23 and HP15_tRNA24 are separated by 25 nucleotidesHP15_tRNA24 and HP15_1322 are separated by 453 nucleotides HP15_1320: HP15_1320 - aspartate kinase: aspartate kinase, monofunctional class, at 1,383,714 to 1,384,952 _1320 HP15_1321: HP15_1321 - carbon storage regulator, at 1,385,163 to 1,385,339 _1321 HP15_tRNA22: HP15_tRNA22 - tRNA-Ser, at 1,385,466 to 1,385,555 _tRNA22 HP15_tRNA23: HP15_tRNA23 - tRNA-Arg, at 1,385,620 to 1,385,696 _tRNA23 HP15_tRNA24: HP15_tRNA24 - tRNA-Arg, at 1,385,722 to 1,385,798 _tRNA24 HP15_1322: HP15_1322 - conserved hypothetical protein, at 1,386,252 to 1,387,145 _1322 Position (kb) 1385 1386Strain fitness (log2 ratio) -2 -1 0 1 2at 1385.119 kb on + strandat 1385.308 kb on + strand, within HP15_1321at 1385.850 kb on + strandat 1385.908 kb on + strandat 1385.919 kb on + strandat 1385.948 kb on - strandat 1386.046 kb on + strandat 1386.046 kb on + strandat 1386.046 kb on + strandat 1386.054 kb on - strandat 1386.056 kb on + strandat 1386.064 kb on - strandat 1386.201 kb on + strandat 1386.203 kb on + strandat 1386.267 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 6
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1,385,119 + +1.3
1,385,308 + HP15_1321 0.82 -2.1
1,385,850 + -1.1
1,385,908 + +0.6
1,385,919 + -0.0
1,385,948 - -1.0
1,386,046 + -1.3
1,386,046 + +1.5
1,386,046 + +0.9
1,386,054 - +0.2
1,386,056 + -0.9
1,386,064 - -1.7
1,386,201 + +1.2
1,386,203 + +0.2
1,386,267 - +2.0

Or see this region's nucleotide sequence