Experiment: monoculture; Experiment C, time point 6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1286 and HP15_1287 are separated by 2 nucleotides HP15_1287 and HP15_1288 are separated by 2 nucleotides HP15_1288 and HP15_1289 are separated by 81 nucleotides
HP15_1286: HP15_1286 - SoxR-reducing system protein RsxE, at 1,346,122 to 1,346,838
_1286
HP15_1287: HP15_1287 - electron transport complex, RnfABCDGE type, G subunit, at 1,346,841 to 1,347,542
_1287
HP15_1288: HP15_1288 - electron transport complex, RnfABCDGE type, D subunit, at 1,347,545 to 1,348,534
_1288
HP15_1289: HP15_1289 - electron transport complex, RnfABCDGE type, C subunit, at 1,348,616 to 1,350,358
_1289
Position (kb)
1347
1348
1349 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2 at 1346.561 kb on + strand, within HP15_1286 at 1346.758 kb on + strand, within HP15_1286 at 1346.862 kb on - strand at 1347.013 kb on + strand, within HP15_1287 at 1347.357 kb on - strand, within HP15_1287 at 1347.398 kb on + strand, within HP15_1287 at 1347.406 kb on - strand, within HP15_1287 at 1347.542 kb on + strand at 1347.720 kb on + strand, within HP15_1288 at 1348.020 kb on - strand, within HP15_1288 at 1348.130 kb on + strand, within HP15_1288 at 1348.420 kb on + strand, within HP15_1288 at 1348.427 kb on - strand, within HP15_1288 at 1348.446 kb on - strand at 1348.446 kb on - strand at 1348.450 kb on + strand at 1348.553 kb on + strand at 1348.673 kb on - strand at 1348.689 kb on + strand at 1348.861 kb on + strand, within HP15_1289 at 1349.112 kb on + strand, within HP15_1289 at 1349.141 kb on + strand, within HP15_1289 at 1349.165 kb on + strand, within HP15_1289 at 1349.173 kb on - strand, within HP15_1289 at 1349.233 kb on - strand, within HP15_1289 at 1349.312 kb on + strand, within HP15_1289 at 1349.411 kb on + strand, within HP15_1289 at 1349.434 kb on - strand, within HP15_1289
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 6 remove 1,346,561 + HP15_1286 0.61 -0.4 1,346,758 + HP15_1286 0.89 -1.7 1,346,862 - -0.4 1,347,013 + HP15_1287 0.25 -1.4 1,347,357 - HP15_1287 0.74 -0.8 1,347,398 + HP15_1287 0.79 +1.9 1,347,406 - HP15_1287 0.80 -2.1 1,347,542 + -1.3 1,347,720 + HP15_1288 0.18 -1.6 1,348,020 - HP15_1288 0.48 -2.3 1,348,130 + HP15_1288 0.59 -2.4 1,348,420 + HP15_1288 0.88 -4.8 1,348,427 - HP15_1288 0.89 -1.2 1,348,446 - -0.8 1,348,446 - -2.3 1,348,450 + -1.5 1,348,553 + -1.3 1,348,673 - -0.3 1,348,689 + -1.3 1,348,861 + HP15_1289 0.14 -1.9 1,349,112 + HP15_1289 0.28 -1.9 1,349,141 + HP15_1289 0.30 -1.1 1,349,165 + HP15_1289 0.31 -1.3 1,349,173 - HP15_1289 0.32 -1.8 1,349,233 - HP15_1289 0.35 -2.4 1,349,312 + HP15_1289 0.40 -2.6 1,349,411 + HP15_1289 0.46 -4.0 1,349,434 - HP15_1289 0.47 -2.0
Or see this region's nucleotide sequence