Strain Fitness in Marinobacter adhaerens HP15 around HP15_1138

Experiment: monoculture; Experiment C, time point 6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1137 and HP15_1138 are separated by 87 nucleotidesHP15_1138 and HP15_1139 are separated by 93 nucleotides HP15_1137: HP15_1137 - helix-turn-helix domain containing protein, AraC type, at 1,166,381 to 1,167,412 _1137 HP15_1138: HP15_1138 - L-carnitine dehydratase/bile acid-inducible protein F, at 1,167,500 to 1,168,717 _1138 HP15_1139: HP15_1139 - acyl-homoserine lactone acylase PvdQ precursor, at 1,168,811 to 1,171,507 _1139 Position (kb) 1167 1168 1169Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1166.619 kb on + strand, within HP15_1137at 1166.701 kb on + strand, within HP15_1137at 1166.709 kb on - strand, within HP15_1137at 1166.807 kb on - strand, within HP15_1137at 1166.809 kb on - strand, within HP15_1137at 1166.819 kb on + strand, within HP15_1137at 1166.848 kb on + strand, within HP15_1137at 1167.353 kb on + strandat 1167.353 kb on + strandat 1167.361 kb on - strandat 1167.474 kb on - strandat 1167.631 kb on + strand, within HP15_1138at 1167.689 kb on + strand, within HP15_1138at 1167.689 kb on + strand, within HP15_1138at 1167.689 kb on + strand, within HP15_1138at 1167.697 kb on - strand, within HP15_1138at 1167.767 kb on + strand, within HP15_1138at 1167.875 kb on - strand, within HP15_1138at 1167.916 kb on - strand, within HP15_1138at 1167.925 kb on + strand, within HP15_1138at 1168.118 kb on - strand, within HP15_1138at 1168.175 kb on - strand, within HP15_1138at 1168.279 kb on + strand, within HP15_1138at 1168.301 kb on - strand, within HP15_1138at 1168.449 kb on - strand, within HP15_1138at 1168.519 kb on - strand, within HP15_1138at 1168.527 kb on + strand, within HP15_1138at 1168.702 kb on - strandat 1168.753 kb on + strandat 1168.883 kb on - strandat 1168.938 kb on + strandat 1169.095 kb on - strand, within HP15_1139at 1169.152 kb on + strand, within HP15_1139at 1169.160 kb on - strand, within HP15_1139at 1169.222 kb on + strand, within HP15_1139at 1169.300 kb on - strand, within HP15_1139at 1169.300 kb on - strand, within HP15_1139at 1169.300 kb on - strand, within HP15_1139at 1169.311 kb on - strand, within HP15_1139at 1169.370 kb on + strand, within HP15_1139at 1169.420 kb on + strand, within HP15_1139at 1169.487 kb on + strand, within HP15_1139at 1169.487 kb on - strand, within HP15_1139at 1169.562 kb on + strand, within HP15_1139at 1169.570 kb on - strand, within HP15_1139at 1169.656 kb on - strand, within HP15_1139

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 6
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1,166,619 + HP15_1137 0.23 -1.0
1,166,701 + HP15_1137 0.31 -0.8
1,166,709 - HP15_1137 0.32 +2.0
1,166,807 - HP15_1137 0.41 +1.5
1,166,809 - HP15_1137 0.41 -0.0
1,166,819 + HP15_1137 0.42 -0.5
1,166,848 + HP15_1137 0.45 +0.3
1,167,353 + +1.4
1,167,353 + +1.0
1,167,361 - +2.3
1,167,474 - -0.8
1,167,631 + HP15_1138 0.11 -0.8
1,167,689 + HP15_1138 0.16 +0.8
1,167,689 + HP15_1138 0.16 +0.4
1,167,689 + HP15_1138 0.16 -0.7
1,167,697 - HP15_1138 0.16 -2.2
1,167,767 + HP15_1138 0.22 +0.0
1,167,875 - HP15_1138 0.31 -0.4
1,167,916 - HP15_1138 0.34 +2.3
1,167,925 + HP15_1138 0.35 -0.2
1,168,118 - HP15_1138 0.51 +1.6
1,168,175 - HP15_1138 0.55 +0.7
1,168,279 + HP15_1138 0.64 +2.8
1,168,301 - HP15_1138 0.66 -0.1
1,168,449 - HP15_1138 0.78 +1.1
1,168,519 - HP15_1138 0.84 -1.0
1,168,527 + HP15_1138 0.84 -1.2
1,168,702 - -1.0
1,168,753 + -0.5
1,168,883 - -0.4
1,168,938 + +2.8
1,169,095 - HP15_1139 0.11 -1.3
1,169,152 + HP15_1139 0.13 +2.0
1,169,160 - HP15_1139 0.13 -1.3
1,169,222 + HP15_1139 0.15 +1.9
1,169,300 - HP15_1139 0.18 -0.3
1,169,300 - HP15_1139 0.18 +0.5
1,169,300 - HP15_1139 0.18 -1.8
1,169,311 - HP15_1139 0.19 +1.3
1,169,370 + HP15_1139 0.21 +0.8
1,169,420 + HP15_1139 0.23 +2.1
1,169,487 + HP15_1139 0.25 +0.0
1,169,487 - HP15_1139 0.25 -1.3
1,169,562 + HP15_1139 0.28 -0.5
1,169,570 - HP15_1139 0.28 +1.4
1,169,656 - HP15_1139 0.31 -0.4

Or see this region's nucleotide sequence