Experiment: monoculture; Experiment C, time point 6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1102 and HP15_1103 are separated by 844 nucleotides HP15_1103 and HP15_1104 are separated by 320 nucleotides
HP15_1102: HP15_1102 - integrase catalytic region, at 1,128,097 to 1,128,906
_1102
HP15_1103: HP15_1103 - protein containing Helix-turn-helix, AraC domain, at 1,129,751 to 1,130,716
_1103
HP15_1104: HP15_1104 - transposase, IS4 family protein-like protein, at 1,131,037 to 1,131,600
_1104
Position (kb)
1129
1130
1131 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1128.798 kb on + strand, within HP15_1102 at 1128.806 kb on - strand, within HP15_1102 at 1128.806 kb on - strand, within HP15_1102 at 1128.875 kb on + strand at 1128.875 kb on + strand at 1128.875 kb on + strand at 1128.883 kb on - strand at 1128.883 kb on - strand at 1128.883 kb on - strand at 1128.945 kb on - strand at 1129.029 kb on + strand at 1129.064 kb on - strand at 1129.069 kb on - strand at 1129.216 kb on + strand at 1129.244 kb on + strand at 1129.267 kb on + strand at 1129.275 kb on - strand at 1129.275 kb on - strand at 1129.340 kb on - strand at 1129.389 kb on - strand at 1129.391 kb on + strand at 1129.480 kb on + strand at 1129.490 kb on + strand at 1129.493 kb on + strand at 1129.498 kb on + strand at 1129.498 kb on + strand at 1129.500 kb on + strand at 1129.500 kb on + strand at 1129.534 kb on + strand at 1129.534 kb on + strand at 1129.534 kb on + strand at 1129.542 kb on - strand at 1129.542 kb on - strand at 1129.542 kb on - strand at 1129.601 kb on + strand at 1129.601 kb on + strand at 1129.601 kb on + strand at 1129.854 kb on - strand, within HP15_1103 at 1129.864 kb on + strand, within HP15_1103 at 1129.864 kb on + strand, within HP15_1103 at 1130.340 kb on + strand, within HP15_1103 at 1130.506 kb on + strand, within HP15_1103 at 1130.651 kb on + strand at 1130.843 kb on + strand at 1130.853 kb on + strand at 1130.870 kb on + strand at 1130.986 kb on - strand at 1130.999 kb on + strand at 1131.035 kb on - strand at 1131.046 kb on + strand at 1131.054 kb on - strand at 1131.091 kb on - strand at 1131.091 kb on - strand at 1131.180 kb on + strand, within HP15_1104 at 1131.298 kb on + strand, within HP15_1104 at 1131.342 kb on - strand, within HP15_1104 at 1131.346 kb on + strand, within HP15_1104 at 1131.384 kb on + strand, within HP15_1104 at 1131.427 kb on + strand, within HP15_1104 at 1131.505 kb on - strand, within HP15_1104 at 1131.630 kb on + strand at 1131.640 kb on + strand at 1131.682 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 6 remove 1,128,798 + HP15_1102 0.87 +1.3 1,128,806 - HP15_1102 0.88 +1.6 1,128,806 - HP15_1102 0.88 +1.1 1,128,875 + -0.3 1,128,875 + -1.6 1,128,875 + -0.9 1,128,883 - +1.4 1,128,883 - -0.8 1,128,883 - -0.7 1,128,945 - -0.7 1,129,029 + +0.8 1,129,064 - +1.3 1,129,069 - +2.5 1,129,216 + -1.0 1,129,244 + +0.6 1,129,267 + +0.5 1,129,275 - -0.8 1,129,275 - -1.0 1,129,340 - +1.8 1,129,389 - +0.9 1,129,391 + -0.9 1,129,480 + -0.8 1,129,490 + +1.6 1,129,493 + +1.4 1,129,498 + +1.4 1,129,498 + +0.4 1,129,500 + -0.3 1,129,500 + +2.3 1,129,534 + -0.2 1,129,534 + -0.8 1,129,534 + -0.3 1,129,542 - -0.2 1,129,542 - -0.7 1,129,542 - -1.0 1,129,601 + +0.3 1,129,601 + +0.8 1,129,601 + +1.9 1,129,854 - HP15_1103 0.11 -0.8 1,129,864 + HP15_1103 0.12 +0.2 1,129,864 + HP15_1103 0.12 +0.8 1,130,340 + HP15_1103 0.61 +0.1 1,130,506 + HP15_1103 0.78 -1.6 1,130,651 + +0.0 1,130,843 + -2.6 1,130,853 + -0.8 1,130,870 + -1.7 1,130,986 - +0.1 1,130,999 + +2.1 1,131,035 - +0.0 1,131,046 + +1.1 1,131,054 - +0.7 1,131,091 - +0.0 1,131,091 - +2.5 1,131,180 + HP15_1104 0.25 +1.2 1,131,298 + HP15_1104 0.46 +0.1 1,131,342 - HP15_1104 0.54 +0.2 1,131,346 + HP15_1104 0.55 +1.5 1,131,384 + HP15_1104 0.62 +0.9 1,131,427 + HP15_1104 0.69 +2.0 1,131,505 - HP15_1104 0.83 +1.8 1,131,630 + +1.2 1,131,640 + +0.0 1,131,682 - -1.0
Or see this region's nucleotide sequence