Experiment: monoculture; Experiment C, time point 6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1043 and HP15_1044 are separated by 56 nucleotides HP15_1044 and HP15_1045 are separated by 71 nucleotides HP15_1045 and HP15_1047 are separated by 114 nucleotides
HP15_1043: HP15_1043 - conserved hypothetical protein, at 1,064,096 to 1,065,163
_1043
HP15_1044: HP15_1044 - lysine exporter protein (LYSE/YGGA), at 1,065,220 to 1,065,858
_1044
HP15_1045: HP15_1045 - 4Fe-4S ferredoxin, iron-sulfur binding domain protein, at 1,065,930 to 1,066,289
_1045
HP15_1047: HP15_1047 - DNA mismatch repair protein MutS, at 1,066,404 to 1,069,034
_1047
Position (kb)
1065
1066
1067 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1065.240 kb on + strand at 1065.240 kb on + strand at 1065.240 kb on + strand at 1065.240 kb on + strand at 1065.248 kb on - strand at 1065.248 kb on - strand at 1065.248 kb on - strand at 1065.309 kb on + strand, within HP15_1044 at 1065.405 kb on - strand, within HP15_1044 at 1065.408 kb on + strand, within HP15_1044 at 1065.627 kb on + strand, within HP15_1044 at 1065.637 kb on + strand, within HP15_1044 at 1065.674 kb on + strand, within HP15_1044 at 1065.690 kb on + strand, within HP15_1044 at 1065.723 kb on + strand, within HP15_1044 at 1065.724 kb on - strand, within HP15_1044 at 1065.749 kb on - strand, within HP15_1044 at 1065.846 kb on + strand at 1066.331 kb on + strand at 1066.372 kb on + strand at 1066.372 kb on + strand at 1066.391 kb on + strand at 1066.399 kb on - strand at 1066.427 kb on - strand at 1066.509 kb on - strand at 1066.516 kb on - strand at 1066.582 kb on - strand at 1066.599 kb on + strand at 1066.635 kb on - strand at 1066.641 kb on - strand at 1066.711 kb on + strand, within HP15_1047 at 1066.719 kb on - strand, within HP15_1047 at 1066.856 kb on + strand, within HP15_1047 at 1066.886 kb on - strand, within HP15_1047 at 1066.892 kb on - strand, within HP15_1047 at 1066.897 kb on + strand, within HP15_1047 at 1066.924 kb on - strand, within HP15_1047 at 1066.937 kb on + strand, within HP15_1047 at 1066.955 kb on + strand, within HP15_1047 at 1066.980 kb on + strand, within HP15_1047 at 1067.127 kb on - strand, within HP15_1047 at 1067.188 kb on + strand, within HP15_1047 at 1067.234 kb on + strand, within HP15_1047 at 1067.241 kb on + strand, within HP15_1047 at 1067.242 kb on + strand, within HP15_1047 at 1067.278 kb on - strand, within HP15_1047
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 6 remove 1,065,240 + -0.5 1,065,240 + +1.3 1,065,240 + +0.2 1,065,240 + -0.9 1,065,248 - +1.4 1,065,248 - +0.0 1,065,248 - +0.5 1,065,309 + HP15_1044 0.14 +0.5 1,065,405 - HP15_1044 0.29 +0.5 1,065,408 + HP15_1044 0.29 -2.4 1,065,627 + HP15_1044 0.64 -1.8 1,065,637 + HP15_1044 0.65 +0.9 1,065,674 + HP15_1044 0.71 -0.0 1,065,690 + HP15_1044 0.74 -0.3 1,065,723 + HP15_1044 0.79 +0.3 1,065,724 - HP15_1044 0.79 -0.2 1,065,749 - HP15_1044 0.83 +1.0 1,065,846 + -2.6 1,066,331 + -0.4 1,066,372 + +2.2 1,066,372 + -1.2 1,066,391 + -0.5 1,066,399 - +0.5 1,066,427 - -1.5 1,066,509 - -1.1 1,066,516 - -0.7 1,066,582 - +0.8 1,066,599 + +1.3 1,066,635 - -0.1 1,066,641 - -0.9 1,066,711 + HP15_1047 0.12 +0.2 1,066,719 - HP15_1047 0.12 -0.9 1,066,856 + HP15_1047 0.17 +0.4 1,066,886 - HP15_1047 0.18 +0.7 1,066,892 - HP15_1047 0.19 +1.2 1,066,897 + HP15_1047 0.19 -0.3 1,066,924 - HP15_1047 0.20 -0.4 1,066,937 + HP15_1047 0.20 +0.2 1,066,955 + HP15_1047 0.21 +0.9 1,066,980 + HP15_1047 0.22 -1.6 1,067,127 - HP15_1047 0.27 -0.3 1,067,188 + HP15_1047 0.30 -0.5 1,067,234 + HP15_1047 0.32 +0.2 1,067,241 + HP15_1047 0.32 +2.3 1,067,242 + HP15_1047 0.32 -0.0 1,067,278 - HP15_1047 0.33 -0.5
Or see this region's nucleotide sequence