Strain Fitness in Marinobacter adhaerens HP15 around HP15_101

Experiment: monoculture; Experiment C, time point 6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_100 and HP15_101 are separated by 43 nucleotidesHP15_101 and HP15_102 are separated by 248 nucleotides HP15_100: HP15_100 - saccharopine dehydrogenase, at 102,084 to 103,295 _100 HP15_101: HP15_101 - outer membrane porin, at 103,339 to 104,310 _101 HP15_102: HP15_102 - conserved hypothetical protein, secreted, at 104,559 to 105,965 _102 Position (kb) 103 104 105Strain fitness (log2 ratio) -2 -1 0 1 2 3at 102.340 kb on + strand, within HP15_100at 102.340 kb on + strand, within HP15_100at 102.348 kb on - strand, within HP15_100at 102.368 kb on - strand, within HP15_100at 102.418 kb on + strand, within HP15_100at 102.418 kb on + strand, within HP15_100at 102.426 kb on - strand, within HP15_100at 102.426 kb on - strand, within HP15_100at 102.441 kb on - strand, within HP15_100at 102.441 kb on - strand, within HP15_100at 102.515 kb on - strand, within HP15_100at 102.515 kb on - strand, within HP15_100at 102.540 kb on - strand, within HP15_100at 102.563 kb on + strand, within HP15_100at 102.573 kb on + strand, within HP15_100at 102.629 kb on + strand, within HP15_100at 102.662 kb on + strand, within HP15_100at 102.670 kb on - strand, within HP15_100at 102.765 kb on + strand, within HP15_100at 102.773 kb on - strand, within HP15_100at 102.799 kb on + strand, within HP15_100at 102.827 kb on - strand, within HP15_100at 102.946 kb on + strand, within HP15_100at 102.975 kb on - strand, within HP15_100at 103.034 kb on - strand, within HP15_100at 103.169 kb on + strand, within HP15_100at 103.177 kb on - strandat 103.304 kb on + strandat 103.314 kb on + strandat 103.317 kb on - strandat 103.317 kb on - strandat 103.394 kb on + strandat 103.394 kb on + strandat 103.394 kb on + strandat 103.394 kb on + strandat 103.394 kb on + strandat 103.394 kb on + strandat 103.394 kb on + strandat 103.394 kb on + strandat 103.394 kb on + strandat 103.394 kb on + strandat 103.394 kb on + strandat 103.394 kb on + strandat 103.394 kb on + strandat 103.394 kb on + strandat 103.394 kb on + strandat 103.394 kb on + strandat 103.394 kb on + strandat 103.394 kb on + strandat 103.394 kb on + strandat 103.394 kb on + strandat 103.394 kb on + strandat 103.394 kb on + strandat 103.402 kb on - strandat 103.402 kb on - strandat 103.402 kb on - strandat 103.402 kb on - strandat 103.402 kb on - strandat 103.402 kb on - strandat 103.402 kb on - strandat 103.402 kb on - strandat 103.402 kb on - strandat 103.402 kb on - strandat 103.402 kb on - strandat 103.402 kb on - strandat 103.402 kb on - strandat 103.402 kb on - strandat 103.465 kb on + strand, within HP15_101at 103.465 kb on + strand, within HP15_101at 103.465 kb on + strand, within HP15_101at 103.473 kb on - strand, within HP15_101at 103.473 kb on - strand, within HP15_101at 103.498 kb on - strand, within HP15_101at 103.539 kb on - strand, within HP15_101at 103.582 kb on + strand, within HP15_101at 103.589 kb on + strand, within HP15_101at 103.589 kb on + strand, within HP15_101at 103.597 kb on - strand, within HP15_101at 103.599 kb on + strand, within HP15_101at 103.607 kb on - strand, within HP15_101at 103.624 kb on - strand, within HP15_101at 103.632 kb on + strand, within HP15_101at 103.666 kb on + strand, within HP15_101at 103.666 kb on + strand, within HP15_101at 103.666 kb on + strand, within HP15_101at 103.666 kb on + strand, within HP15_101at 103.666 kb on + strand, within HP15_101at 103.674 kb on - strand, within HP15_101at 103.674 kb on - strand, within HP15_101at 103.674 kb on - strand, within HP15_101at 103.674 kb on - strand, within HP15_101at 103.683 kb on + strand, within HP15_101at 103.683 kb on + strand, within HP15_101at 103.683 kb on + strand, within HP15_101at 103.683 kb on + strand, within HP15_101at 103.683 kb on + strand, within HP15_101at 103.683 kb on + strand, within HP15_101at 103.683 kb on + strand, within HP15_101at 103.683 kb on + strand, within HP15_101at 103.683 kb on + strand, within HP15_101at 103.683 kb on + strand, within HP15_101at 103.683 kb on + strand, within HP15_101at 103.683 kb on + strand, within HP15_101at 103.691 kb on - strand, within HP15_101at 103.691 kb on - strand, within HP15_101at 103.691 kb on - strand, within HP15_101at 103.691 kb on - strand, within HP15_101at 103.691 kb on - strand, within HP15_101at 103.696 kb on - strand, within HP15_101at 103.698 kb on + strand, within HP15_101at 103.762 kb on + strand, within HP15_101at 103.762 kb on + strand, within HP15_101at 103.767 kb on + strand, within HP15_101at 103.767 kb on + strand, within HP15_101at 103.770 kb on - strand, within HP15_101at 103.780 kb on + strand, within HP15_101at 103.823 kb on - strand, within HP15_101at 103.999 kb on - strand, within HP15_101at 103.999 kb on - strand, within HP15_101at 104.032 kb on + strand, within HP15_101at 104.047 kb on + strand, within HP15_101at 104.118 kb on + strand, within HP15_101at 104.123 kb on + strand, within HP15_101at 104.164 kb on + strand, within HP15_101at 104.179 kb on + strand, within HP15_101at 104.187 kb on - strand, within HP15_101at 104.217 kb on + strandat 104.217 kb on + strandat 104.225 kb on - strandat 104.251 kb on - strandat 104.266 kb on - strandat 104.266 kb on - strandat 104.266 kb on - strandat 104.285 kb on + strandat 104.376 kb on + strandat 104.384 kb on - strandat 104.571 kb on + strandat 104.594 kb on + strandat 104.604 kb on - strandat 104.614 kb on - strandat 104.657 kb on - strandat 104.660 kb on - strandat 104.672 kb on + strandat 104.672 kb on + strandat 104.672 kb on + strandat 104.672 kb on + strandat 104.680 kb on - strandat 104.680 kb on - strandat 104.680 kb on - strandat 104.680 kb on - strandat 104.815 kb on - strand, within HP15_102at 104.839 kb on - strand, within HP15_102at 104.839 kb on - strand, within HP15_102at 104.855 kb on + strand, within HP15_102at 104.863 kb on - strand, within HP15_102at 104.875 kb on - strand, within HP15_102at 104.883 kb on + strand, within HP15_102at 104.891 kb on + strand, within HP15_102at 104.891 kb on + strand, within HP15_102at 104.901 kb on + strand, within HP15_102at 104.935 kb on + strand, within HP15_102at 104.935 kb on + strand, within HP15_102at 104.935 kb on + strand, within HP15_102at 104.935 kb on + strand, within HP15_102at 104.935 kb on + strand, within HP15_102at 104.943 kb on - strand, within HP15_102at 104.943 kb on - strand, within HP15_102at 105.015 kb on + strand, within HP15_102at 105.033 kb on - strand, within HP15_102at 105.053 kb on + strand, within HP15_102at 105.076 kb on + strand, within HP15_102at 105.097 kb on + strand, within HP15_102at 105.097 kb on + strand, within HP15_102at 105.102 kb on + strand, within HP15_102at 105.105 kb on - strand, within HP15_102at 105.105 kb on - strand, within HP15_102at 105.149 kb on + strand, within HP15_102at 105.154 kb on + strand, within HP15_102at 105.157 kb on - strand, within HP15_102at 105.163 kb on + strand, within HP15_102at 105.193 kb on - strand, within HP15_102at 105.242 kb on - strand, within HP15_102

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 6
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102,340 + HP15_100 0.21 +0.4
102,340 + HP15_100 0.21 +1.3
102,348 - HP15_100 0.22 -0.2
102,368 - HP15_100 0.23 +1.5
102,418 + HP15_100 0.28 -0.5
102,418 + HP15_100 0.28 +0.3
102,426 - HP15_100 0.28 +0.3
102,426 - HP15_100 0.28 +0.3
102,441 - HP15_100 0.29 -0.1
102,441 - HP15_100 0.29 +1.6
102,515 - HP15_100 0.36 -0.9
102,515 - HP15_100 0.36 +0.0
102,540 - HP15_100 0.38 -0.5
102,563 + HP15_100 0.40 -1.1
102,573 + HP15_100 0.40 +1.8
102,629 + HP15_100 0.45 +0.1
102,662 + HP15_100 0.48 -0.3
102,670 - HP15_100 0.48 -0.5
102,765 + HP15_100 0.56 +0.0
102,773 - HP15_100 0.57 -0.4
102,799 + HP15_100 0.59 +0.5
102,827 - HP15_100 0.61 -1.3
102,946 + HP15_100 0.71 -0.1
102,975 - HP15_100 0.74 +2.3
103,034 - HP15_100 0.78 +1.0
103,169 + HP15_100 0.90 +0.5
103,177 - -0.2
103,304 + +0.1
103,314 + -0.2
103,317 - +1.9
103,317 - +2.2
103,394 + +0.0
103,394 + +0.4
103,394 + +1.7
103,394 + +0.5
103,394 + -1.8
103,394 + +2.5
103,394 + -0.9
103,394 + +0.9
103,394 + -1.6
103,394 + +2.3
103,394 + +0.8
103,394 + +1.9
103,394 + +0.8
103,394 + -0.5
103,394 + -1.0
103,394 + +1.7
103,394 + +0.2
103,394 + -0.9
103,394 + +2.0
103,394 + +1.7
103,394 + -0.2
103,394 + -1.5
103,402 - +1.6
103,402 - +3.1
103,402 - -2.7
103,402 - +1.3
103,402 - -0.9
103,402 - +1.3
103,402 - -1.0
103,402 - -0.3
103,402 - -0.3
103,402 - -0.4
103,402 - -0.3
103,402 - +1.9
103,402 - +0.1
103,402 - -0.2
103,465 + HP15_101 0.13 -0.9
103,465 + HP15_101 0.13 -0.8
103,465 + HP15_101 0.13 +0.1
103,473 - HP15_101 0.14 +0.9
103,473 - HP15_101 0.14 -1.1
103,498 - HP15_101 0.16 +0.7
103,539 - HP15_101 0.21 +2.3
103,582 + HP15_101 0.25 +1.0
103,589 + HP15_101 0.26 +2.8
103,589 + HP15_101 0.26 +1.2
103,597 - HP15_101 0.27 +2.2
103,599 + HP15_101 0.27 +0.4
103,607 - HP15_101 0.28 -0.3
103,624 - HP15_101 0.29 -0.1
103,632 + HP15_101 0.30 -0.5
103,666 + HP15_101 0.34 -0.5
103,666 + HP15_101 0.34 +0.0
103,666 + HP15_101 0.34 +0.3
103,666 + HP15_101 0.34 -0.2
103,666 + HP15_101 0.34 -1.4
103,674 - HP15_101 0.34 +0.6
103,674 - HP15_101 0.34 -0.9
103,674 - HP15_101 0.34 -0.2
103,674 - HP15_101 0.34 -0.2
103,683 + HP15_101 0.35 -1.8
103,683 + HP15_101 0.35 -0.5
103,683 + HP15_101 0.35 -1.1
103,683 + HP15_101 0.35 -0.9
103,683 + HP15_101 0.35 +1.0
103,683 + HP15_101 0.35 +0.9
103,683 + HP15_101 0.35 +2.3
103,683 + HP15_101 0.35 +0.4
103,683 + HP15_101 0.35 +2.2
103,683 + HP15_101 0.35 +1.1
103,683 + HP15_101 0.35 +2.6
103,683 + HP15_101 0.35 -0.6
103,691 - HP15_101 0.36 +1.9
103,691 - HP15_101 0.36 +1.5
103,691 - HP15_101 0.36 -2.0
103,691 - HP15_101 0.36 +1.8
103,691 - HP15_101 0.36 -0.1
103,696 - HP15_101 0.37 -0.9
103,698 + HP15_101 0.37 +0.3
103,762 + HP15_101 0.44 +0.4
103,762 + HP15_101 0.44 -0.1
103,767 + HP15_101 0.44 +1.5
103,767 + HP15_101 0.44 +0.9
103,770 - HP15_101 0.44 -1.1
103,780 + HP15_101 0.45 -0.4
103,823 - HP15_101 0.50 +1.6
103,999 - HP15_101 0.68 -0.8
103,999 - HP15_101 0.68 -0.4
104,032 + HP15_101 0.71 -2.6
104,047 + HP15_101 0.73 +1.2
104,118 + HP15_101 0.80 +0.9
104,123 + HP15_101 0.81 -1.8
104,164 + HP15_101 0.85 -0.2
104,179 + HP15_101 0.86 +0.2
104,187 - HP15_101 0.87 +1.7
104,217 + -1.1
104,217 + -1.0
104,225 - +1.8
104,251 - +1.7
104,266 - -1.3
104,266 - -0.1
104,266 - +0.0
104,285 + +1.5
104,376 + +1.3
104,384 - +1.8
104,571 + +1.9
104,594 + -0.5
104,604 - +1.8
104,614 - +0.2
104,657 - -0.7
104,660 - -0.9
104,672 + -0.1
104,672 + +0.5
104,672 + -0.3
104,672 + +2.4
104,680 - +0.2
104,680 - +0.2
104,680 - +0.0
104,680 - +0.2
104,815 - HP15_102 0.18 +1.1
104,839 - HP15_102 0.20 -0.3
104,839 - HP15_102 0.20 +1.1
104,855 + HP15_102 0.21 +1.2
104,863 - HP15_102 0.22 -0.9
104,875 - HP15_102 0.22 +0.5
104,883 + HP15_102 0.23 +0.9
104,891 + HP15_102 0.24 +1.6
104,891 + HP15_102 0.24 +0.8
104,901 + HP15_102 0.24 -0.8
104,935 + HP15_102 0.27 -0.8
104,935 + HP15_102 0.27 +1.8
104,935 + HP15_102 0.27 -1.0
104,935 + HP15_102 0.27 +1.1
104,935 + HP15_102 0.27 -0.8
104,943 - HP15_102 0.27 -0.4
104,943 - HP15_102 0.27 -0.7
105,015 + HP15_102 0.32 +0.5
105,033 - HP15_102 0.34 -0.4
105,053 + HP15_102 0.35 -1.6
105,076 + HP15_102 0.37 -0.1
105,097 + HP15_102 0.38 -1.1
105,097 + HP15_102 0.38 -1.0
105,102 + HP15_102 0.39 +2.8
105,105 - HP15_102 0.39 +0.0
105,105 - HP15_102 0.39 +0.5
105,149 + HP15_102 0.42 +2.4
105,154 + HP15_102 0.42 +0.8
105,157 - HP15_102 0.43 -0.8
105,163 + HP15_102 0.43 +0.3
105,193 - HP15_102 0.45 -0.8
105,242 - HP15_102 0.49 -1.0

Or see this region's nucleotide sequence