Strain Fitness in Marinobacter adhaerens HP15 around HP15_10

Experiment: monoculture; Experiment C, time point 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	monoculture; Experiment C, time point 6
10,389	+		HP15_9	0.26	+0.2
10,390	+		HP15_9	0.26	+0.1
10,417	-		HP15_9	0.28	+0.3
10,444	+		HP15_9	0.30	-1.0
10,482	+		HP15_9	0.34	-2.6
10,506	-		HP15_9	0.36	-1.0
10,560	-		HP15_9	0.40	-0.4
10,608	-		HP15_9	0.45	+2.8
10,698	-		HP15_9	0.52	-0.7
10,720	+		HP15_9	0.54	-1.2
10,728	-		HP15_9	0.55	+2.0
10,739	+		HP15_9	0.56	-2.0
10,739	+		HP15_9	0.56	+2.3
10,747	-		HP15_9	0.57	-1.4
10,747	-		HP15_9	0.57	+0.0
10,747	-		HP15_9	0.57	+2.6
10,747	-		HP15_9	0.57	+2.1
10,787	+		HP15_9	0.60	-3.0
10,792	+		HP15_9	0.60	+0.4
10,792	+		HP15_9	0.60	+1.7
10,800	-		HP15_9	0.61	+1.0
10,826	+		HP15_9	0.63	+1.9
10,831	+		HP15_9	0.64	+3.0
10,836	-		HP15_9	0.64	-0.4
10,850	+		HP15_9	0.65	+0.3
10,858	-		HP15_9	0.66	-0.4
10,881	+		HP15_9	0.68	+0.2
10,881	+		HP15_9	0.68	+0.3
10,881	+		HP15_9	0.68	+1.6
10,882	-		HP15_9	0.68	+0.5
10,899	-		HP15_9	0.70	+4.1
10,899	-		HP15_9	0.70	-0.5
10,899	-		HP15_9	0.70	+0.6
10,954	-		HP15_9	0.74	-1.9
10,954	-		HP15_9	0.74	+0.3
11,046	+		HP15_9	0.82	-1.1
11,093	+		HP15_9	0.86	-0.3
11,171	+				+1.0
11,277	-				+0.1
11,334	+				-0.6
11,338	-				+0.0
11,357	-				+2.3
11,362	-				-1.3
11,400	+				-0.7
11,427	-				-1.1
11,448	-				+1.2
11,500	-				-1.0
11,609	+				-0.5
11,609	+				+2.2
11,701	+		HP15_10	0.13	+1.2
11,701	+		HP15_10	0.13	-0.2
11,709	-		HP15_10	0.13	+0.1
11,709	-		HP15_10	0.13	-1.9
11,773	-		HP15_10	0.16	-0.2
11,788	+		HP15_10	0.16	-1.0
11,788	+		HP15_10	0.16	-0.4
11,788	+		HP15_10	0.16	+2.5
11,788	+		HP15_10	0.16	-2.3
11,790	+		HP15_10	0.16	-0.4
11,796	-		HP15_10	0.17	+2.4
11,832	-		HP15_10	0.18	+0.2
11,838	+		HP15_10	0.18	-0.0
11,848	+		HP15_10	0.19	-1.1
11,890	+		HP15_10	0.20	+0.8
11,895	+		HP15_10	0.20	-0.7
11,903	+		HP15_10	0.21	-1.2
11,903	-		HP15_10	0.21	+0.9
11,916	-		HP15_10	0.21	-0.2
11,960	-		HP15_10	0.23	-0.7
11,974	-		HP15_10	0.24	-0.5
12,163	+		HP15_10	0.31	+1.7
12,169	+		HP15_10	0.31	-0.2
12,169	+		HP15_10	0.31	+2.4
12,174	+		HP15_10	0.31	-0.5
12,192	-		HP15_10	0.32	+1.2
12,202	+		HP15_10	0.33	+1.0
12,202	+		HP15_10	0.33	-0.5
12,215	-		HP15_10	0.33	+1.1
12,229	-		HP15_10	0.34	-0.8
12,248	-		HP15_10	0.34	-0.1
12,266	+		HP15_10	0.35	+1.9
12,279	-		HP15_10	0.36	+1.6
12,311	+		HP15_10	0.37	-2.3
12,324	+		HP15_10	0.37	+0.3
12,374	-		HP15_10	0.39	-1.0
12,384	+		HP15_10	0.40	+2.2
12,386	+		HP15_10	0.40	+3.5
12,445	+		HP15_10	0.42	+0.9
12,461	-		HP15_10	0.43	-1.7
12,563	-		HP15_10	0.47	+1.6
12,643	+		HP15_10	0.50	+1.0
12,764	+		HP15_10	0.55	+2.3
12,789	+		HP15_10	0.56	+0.0
12,793	-		HP15_10	0.56	+0.1
12,875	+		HP15_10	0.59	-0.1
12,882	-		HP15_10	0.59	+0.6
12,949	+		HP15_10	0.62	-3.3
12,949	+		HP15_10	0.62	-0.8
12,949	+		HP15_10	0.62	-0.5
12,957	-		HP15_10	0.62	-0.5
12,992	+		HP15_10	0.64	+2.5
13,008	-		HP15_10	0.64	+2.5
13,008	-		HP15_10	0.64	-0.5
13,011	+		HP15_10	0.64	-1.3
13,011	+		HP15_10	0.64	+0.6
13,016	+		HP15_10	0.65	+2.3
13,019	-		HP15_10	0.65	+0.0
13,024	-		HP15_10	0.65	-0.2
13,093	+		HP15_10	0.68	-1.1
13,106	-		HP15_10	0.68	+2.3
13,107	+		HP15_10	0.68	-0.3
13,115	-		HP15_10	0.69	-0.8
13,115	-		HP15_10	0.69	+0.9
13,188	+		HP15_10	0.71	-0.3
13,268	-		HP15_10	0.75	-0.8
13,312	-		HP15_10	0.76	-0.1
13,331	+		HP15_10	0.77	-1.5
13,337	-		HP15_10	0.77	+1.6
13,339	-		HP15_10	0.77	+1.2
13,339	-		HP15_10	0.77	-1.5
13,339	-		HP15_10	0.77	+1.2
13,344	+		HP15_10	0.78	+0.9
13,352	-		HP15_10	0.78	-1.5
13,365	+		HP15_10	0.78	+1.2
13,365	+		HP15_10	0.78	+0.2
13,398	+		HP15_10	0.80	+1.0
13,455	+		HP15_10	0.82	-0.7
13,462	+		HP15_10	0.82	+0.5
13,462	+		HP15_10	0.82	-2.5
13,463	-		HP15_10	0.82	-0.4
13,467	+		HP15_10	0.82	+1.0
13,467	+		HP15_10	0.82	+0.3
13,467	+		HP15_10	0.82	-0.9
13,475	-		HP15_10	0.83	+0.3
13,475	-		HP15_10	0.83	-1.2
13,512	-		HP15_10	0.84	+0.1
13,589	-		HP15_10	0.87	-1.4
13,599	+		HP15_10	0.88	-0.2
13,599	+		HP15_10	0.88	-0.8
13,599	+		HP15_10	0.88	+0.2
13,675	-				-0.7
13,766	+				+2.2
13,883	-				-0.6
13,896	-				-0.2
13,933	+				+1.9
13,941	-				+0.3
13,941	-				-1.4
13,976	-				-0.7
14,148	-		HP15_11	0.18	+1.5
14,245	+		HP15_11	0.28	+0.9
14,271	-		HP15_11	0.31	+1.2
14,443	-		HP15_11	0.48	+1.0
14,487	+		HP15_11	0.53	-0.6
14,535	-		HP15_11	0.58	+0.1
14,554	+		HP15_11	0.60	-0.2
14,562	-		HP15_11	0.61	+1.8
14,566	-		HP15_11	0.61	+1.0
14,578	-		HP15_11	0.62	+1.1
14,583	-		HP15_11	0.63	-0.7
14,583	-		HP15_11	0.63	+1.0
14,620	+		HP15_11	0.67	-1.7
14,707	+		HP15_11	0.76	-1.2
14,715	-		HP15_11	0.77	+0.6
14,754	+		HP15_11	0.81	+0.1
14,796	+		HP15_11	0.85	-0.3
14,847	+				-0.5
14,872	+				+0.8
14,873	+				+0.7
14,879	+				-0.5
14,880	-				+1.9
14,903	-				+2.0