Experiment: monoculture; Experiment C, time point 5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_940 and HP15_941 are separated by 302 nucleotides HP15_941 and HP15_942 are separated by 255 nucleotides
HP15_940: HP15_940 - putrescine ABC transporter, periplasmic putrescine-binding protein, at 955,039 to 956,145
_940
HP15_941: HP15_941 - conserved hypothetical protein, secreted, at 956,448 to 956,774
_941
HP15_942: HP15_942 - glutamate-putrescine ligase, at 957,030 to 958,394
_942
Position (kb) 956
957 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 955.448 kb on - strand, within HP15_940 at 955.453 kb on - strand, within HP15_940 at 955.495 kb on - strand, within HP15_940 at 955.505 kb on + strand, within HP15_940 at 955.505 kb on + strand, within HP15_940 at 955.558 kb on + strand, within HP15_940 at 955.558 kb on + strand, within HP15_940 at 955.560 kb on - strand, within HP15_940 at 955.581 kb on - strand, within HP15_940 at 955.612 kb on - strand, within HP15_940 at 955.754 kb on + strand, within HP15_940 at 955.857 kb on - strand, within HP15_940 at 956.100 kb on + strand at 956.101 kb on + strand at 956.108 kb on - strand at 956.134 kb on - strand at 956.201 kb on + strand at 956.201 kb on + strand at 956.206 kb on + strand at 956.206 kb on + strand at 956.211 kb on + strand at 956.214 kb on - strand at 956.214 kb on - strand at 956.219 kb on - strand at 956.237 kb on + strand at 956.260 kb on - strand at 956.273 kb on - strand at 956.284 kb on - strand at 956.310 kb on - strand at 956.422 kb on - strand at 956.465 kb on + strand at 956.571 kb on + strand, within HP15_941 at 956.574 kb on - strand, within HP15_941 at 956.574 kb on - strand, within HP15_941 at 956.624 kb on + strand, within HP15_941 at 956.671 kb on - strand, within HP15_941 at 956.730 kb on + strand, within HP15_941 at 956.873 kb on + strand at 956.956 kb on + strand at 956.956 kb on + strand at 956.968 kb on + strand at 956.976 kb on - strand at 957.256 kb on - strand, within HP15_942 at 957.298 kb on + strand, within HP15_942 at 957.306 kb on - strand, within HP15_942 at 957.468 kb on - strand, within HP15_942 at 957.548 kb on + strand, within HP15_942 at 957.607 kb on + strand, within HP15_942 at 957.683 kb on - strand, within HP15_942 at 957.750 kb on + strand, within HP15_942
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 5 remove 955,448 - HP15_940 0.37 +0.6 955,453 - HP15_940 0.37 -0.2 955,495 - HP15_940 0.41 +0.5 955,505 + HP15_940 0.42 +1.3 955,505 + HP15_940 0.42 +0.9 955,558 + HP15_940 0.47 +0.1 955,558 + HP15_940 0.47 +0.1 955,560 - HP15_940 0.47 -0.3 955,581 - HP15_940 0.49 -1.3 955,612 - HP15_940 0.52 +2.0 955,754 + HP15_940 0.65 +0.0 955,857 - HP15_940 0.74 +1.2 956,100 + -0.4 956,101 + +0.3 956,108 - -1.0 956,134 - +0.9 956,201 + -0.2 956,201 + +0.3 956,206 + +1.2 956,206 + -0.1 956,211 + +1.8 956,214 - +1.3 956,214 - +1.5 956,219 - -0.6 956,237 + -3.5 956,260 - +1.6 956,273 - +0.6 956,284 - +1.4 956,310 - -0.6 956,422 - +1.7 956,465 + +1.2 956,571 + HP15_941 0.38 -1.0 956,574 - HP15_941 0.39 +0.1 956,574 - HP15_941 0.39 -1.7 956,624 + HP15_941 0.54 -0.4 956,671 - HP15_941 0.68 +0.6 956,730 + HP15_941 0.86 -0.4 956,873 + -0.0 956,956 + -0.2 956,956 + -0.8 956,968 + +1.5 956,976 - -0.3 957,256 - HP15_942 0.17 -0.4 957,298 + HP15_942 0.20 -0.4 957,306 - HP15_942 0.20 -0.4 957,468 - HP15_942 0.32 +1.4 957,548 + HP15_942 0.38 -1.0 957,607 + HP15_942 0.42 +0.0 957,683 - HP15_942 0.48 -1.0 957,750 + HP15_942 0.53 +0.2
Or see this region's nucleotide sequence