Experiment: monoculture; Experiment C, time point 5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_850 and HP15_851 are separated by 24 nucleotides HP15_851 and HP15_852 are separated by 25 nucleotides HP15_852 and HP15_853 are separated by 18 nucleotides HP15_853 and HP15_854 are separated by 64 nucleotides
HP15_850: HP15_850 - GGDEF domain protein, at 868,352 to 869,392
_850
HP15_851: HP15_851 - integral membrane protein-like protein, at 869,417 to 869,872
_851
HP15_852: HP15_852 - MaoC-like dehydratase, at 869,898 to 870,368
_852
HP15_853: HP15_853 - RIO1/ZK632.3/MJ0444 family protein, at 870,387 to 871,283
_853
HP15_854: HP15_854 - conserved hypothetical protein, secreted, at 871,348 to 872,208
_854
Position (kb) 869
870
871 Strain fitness (log2 ratio) -2
-1
0
1
2 at 869.077 kb on - strand, within HP15_850 at 869.102 kb on + strand, within HP15_850 at 869.110 kb on - strand, within HP15_850 at 869.110 kb on - strand, within HP15_850 at 869.124 kb on - strand, within HP15_850 at 869.135 kb on - strand, within HP15_850 at 869.191 kb on - strand, within HP15_850 at 869.311 kb on - strand at 869.370 kb on + strand at 869.385 kb on - strand at 869.454 kb on - strand at 869.586 kb on + strand, within HP15_851 at 869.786 kb on - strand, within HP15_851 at 869.837 kb on - strand at 869.867 kb on + strand at 869.875 kb on - strand at 869.875 kb on - strand at 869.875 kb on - strand at 869.984 kb on - strand, within HP15_852 at 870.048 kb on + strand, within HP15_852 at 870.055 kb on - strand, within HP15_852 at 870.100 kb on + strand, within HP15_852 at 870.195 kb on - strand, within HP15_852 at 870.233 kb on + strand, within HP15_852 at 870.377 kb on + strand at 870.403 kb on - strand at 870.538 kb on + strand, within HP15_853 at 870.582 kb on - strand, within HP15_853 at 870.582 kb on - strand, within HP15_853 at 870.584 kb on + strand, within HP15_853 at 870.820 kb on - strand, within HP15_853 at 870.858 kb on - strand, within HP15_853 at 870.911 kb on - strand, within HP15_853 at 870.944 kb on + strand, within HP15_853 at 871.038 kb on + strand, within HP15_853 at 871.046 kb on - strand, within HP15_853 at 871.084 kb on - strand, within HP15_853 at 871.144 kb on + strand, within HP15_853 at 871.157 kb on + strand, within HP15_853 at 871.302 kb on + strand at 871.313 kb on + strand at 871.320 kb on - strand at 871.345 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 5 remove 869,077 - HP15_850 0.70 -1.4 869,102 + HP15_850 0.72 -2.0 869,110 - HP15_850 0.73 -2.7 869,110 - HP15_850 0.73 +1.6 869,124 - HP15_850 0.74 -1.5 869,135 - HP15_850 0.75 -1.2 869,191 - HP15_850 0.81 -1.4 869,311 - +1.0 869,370 + -0.2 869,385 - -0.6 869,454 - +1.8 869,586 + HP15_851 0.37 -0.1 869,786 - HP15_851 0.81 +2.1 869,837 - +1.5 869,867 + +1.2 869,875 - -0.2 869,875 - -0.1 869,875 - -0.3 869,984 - HP15_852 0.18 -0.5 870,048 + HP15_852 0.32 -0.8 870,055 - HP15_852 0.33 -0.0 870,100 + HP15_852 0.43 +0.3 870,195 - HP15_852 0.63 -0.2 870,233 + HP15_852 0.71 +1.3 870,377 + +0.3 870,403 - -0.3 870,538 + HP15_853 0.17 +2.3 870,582 - HP15_853 0.22 -1.6 870,582 - HP15_853 0.22 -1.8 870,584 + HP15_853 0.22 -0.7 870,820 - HP15_853 0.48 -0.6 870,858 - HP15_853 0.53 -0.1 870,911 - HP15_853 0.58 -0.9 870,944 + HP15_853 0.62 -0.4 871,038 + HP15_853 0.73 -0.7 871,046 - HP15_853 0.73 -0.6 871,084 - HP15_853 0.78 -0.5 871,144 + HP15_853 0.84 -1.8 871,157 + HP15_853 0.86 -0.1 871,302 + -0.6 871,313 + -1.9 871,320 - +1.4 871,345 - -0.4
Or see this region's nucleotide sequence