Experiment: monoculture; Experiment C, time point 5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_832 and HP15_833 are separated by 642 nucleotides HP15_833 and HP15_834 are separated by 121 nucleotides HP15_834 and HP15_835 overlap by 7 nucleotides
HP15_832: HP15_832 - aldo/keto reductase-like diketogulonate reductase, at 849,999 to 850,934
_832
HP15_833: HP15_833 - 2,5-diketo-D-gluconic acid reductase B, at 851,577 to 852,386
_833
HP15_834: HP15_834 - glutathione-dependent formaldehyde-activating, GFA, at 852,508 to 852,921
_834
HP15_835: HP15_835 - secreted protein containing glucose sorbosone dehydrogenase domain, at 852,915 to 854,036
_835
Position (kb) 851
852
853 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 850.601 kb on + strand, within HP15_832 at 850.619 kb on - strand, within HP15_832 at 850.626 kb on + strand, within HP15_832 at 850.663 kb on + strand, within HP15_832 at 850.663 kb on + strand, within HP15_832 at 850.814 kb on - strand, within HP15_832 at 850.847 kb on - strand at 851.087 kb on + strand at 851.092 kb on + strand at 851.092 kb on + strand at 851.097 kb on + strand at 851.100 kb on - strand at 851.115 kb on - strand at 851.157 kb on + strand at 851.324 kb on + strand at 851.332 kb on - strand at 851.358 kb on + strand at 851.359 kb on + strand at 851.398 kb on - strand at 851.429 kb on + strand at 851.459 kb on - strand at 851.493 kb on - strand at 851.507 kb on - strand at 851.510 kb on + strand at 851.689 kb on + strand, within HP15_833 at 851.779 kb on - strand, within HP15_833 at 851.855 kb on + strand, within HP15_833 at 851.863 kb on - strand, within HP15_833 at 851.895 kb on - strand, within HP15_833 at 851.915 kb on + strand, within HP15_833 at 852.033 kb on + strand, within HP15_833 at 852.051 kb on - strand, within HP15_833 at 852.115 kb on + strand, within HP15_833 at 852.115 kb on + strand, within HP15_833 at 852.115 kb on + strand, within HP15_833 at 852.115 kb on + strand, within HP15_833 at 852.123 kb on - strand, within HP15_833 at 852.123 kb on - strand, within HP15_833 at 852.215 kb on + strand, within HP15_833 at 852.277 kb on - strand, within HP15_833 at 852.292 kb on + strand, within HP15_833 at 852.478 kb on + strand at 852.478 kb on + strand at 852.486 kb on - strand at 852.498 kb on + strand at 852.498 kb on + strand at 852.602 kb on - strand, within HP15_834 at 852.653 kb on - strand, within HP15_834 at 852.659 kb on - strand, within HP15_834 at 852.752 kb on + strand, within HP15_834 at 853.034 kb on - strand, within HP15_835 at 853.141 kb on + strand, within HP15_835 at 853.149 kb on - strand, within HP15_835 at 853.220 kb on + strand, within HP15_835 at 853.238 kb on - strand, within HP15_835 at 853.323 kb on - strand, within HP15_835 at 853.336 kb on - strand, within HP15_835
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 5 remove 850,601 + HP15_832 0.64 +0.9 850,619 - HP15_832 0.66 +0.7 850,626 + HP15_832 0.67 -0.1 850,663 + HP15_832 0.71 +1.0 850,663 + HP15_832 0.71 -0.6 850,814 - HP15_832 0.87 +1.5 850,847 - +0.1 851,087 + +1.8 851,092 + +1.9 851,092 + +1.4 851,097 + +1.1 851,100 - +2.9 851,115 - +1.3 851,157 + -0.5 851,324 + -1.1 851,332 - +1.6 851,358 + +0.2 851,359 + -0.0 851,398 - +1.4 851,429 + -0.3 851,459 - -0.3 851,493 - +0.5 851,507 - -0.5 851,510 + -0.1 851,689 + HP15_833 0.14 +1.6 851,779 - HP15_833 0.25 -0.1 851,855 + HP15_833 0.34 -0.7 851,863 - HP15_833 0.35 +0.1 851,895 - HP15_833 0.39 -0.7 851,915 + HP15_833 0.42 +0.4 852,033 + HP15_833 0.56 -0.3 852,051 - HP15_833 0.59 -0.9 852,115 + HP15_833 0.66 -0.6 852,115 + HP15_833 0.66 +0.0 852,115 + HP15_833 0.66 -1.0 852,115 + HP15_833 0.66 +1.1 852,123 - HP15_833 0.67 -0.4 852,123 - HP15_833 0.67 +0.5 852,215 + HP15_833 0.79 +0.9 852,277 - HP15_833 0.86 -0.7 852,292 + HP15_833 0.88 -0.4 852,478 + -0.5 852,478 + +1.1 852,486 - -0.4 852,498 + -0.5 852,498 + -0.7 852,602 - HP15_834 0.23 -0.2 852,653 - HP15_834 0.35 +0.6 852,659 - HP15_834 0.36 -0.1 852,752 + HP15_834 0.59 -0.3 853,034 - HP15_835 0.11 +0.5 853,141 + HP15_835 0.20 -2.0 853,149 - HP15_835 0.21 +2.2 853,220 + HP15_835 0.27 +0.1 853,238 - HP15_835 0.29 -0.5 853,323 - HP15_835 0.36 +2.1 853,336 - HP15_835 0.38 -0.3
Or see this region's nucleotide sequence