Experiment: monoculture; Experiment C, time point 5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_675 and HP15_676 are separated by 11 nucleotides HP15_676 and HP15_677 are separated by 3 nucleotides HP15_677 and HP15_678 are separated by 91 nucleotides HP15_678 and HP15_679 are separated by 9 nucleotides HP15_679 and HP15_680 are separated by 76 nucleotides HP15_680 and HP15_681 are separated by 86 nucleotides
HP15_675: HP15_675 - conserved hypothetical protein, at 695,272 to 695,703
_675
HP15_676: HP15_676 - N-acetylmuramoyl-L-alanine amidase, at 695,715 to 696,140
_676
HP15_677: HP15_677 - hypothetical protein, at 696,144 to 696,452
_677
HP15_678: HP15_678 - conserved hypothetical protein, at 696,544 to 697,077
_678
HP15_679: HP15_679 - conserved hypothetical protein, at 697,087 to 697,344
_679
HP15_680: HP15_680 - conserved hypothetical protein, at 697,421 to 697,642
_680
HP15_681: HP15_681 - conserved hypothetical protein, at 697,729 to 698,403
_681
Position (kb) 696
697
698 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 695.571 kb on - strand, within HP15_675 at 695.603 kb on + strand, within HP15_675 at 695.609 kb on + strand, within HP15_675 at 695.617 kb on - strand, within HP15_675 at 695.659 kb on - strand, within HP15_675 at 695.710 kb on + strand at 695.766 kb on - strand, within HP15_676 at 695.801 kb on + strand, within HP15_676 at 695.860 kb on + strand, within HP15_676 at 695.860 kb on + strand, within HP15_676 at 695.914 kb on - strand, within HP15_676 at 695.957 kb on + strand, within HP15_676 at 695.957 kb on - strand, within HP15_676 at 696.085 kb on + strand, within HP15_676 at 696.092 kb on + strand, within HP15_676 at 696.235 kb on + strand, within HP15_677 at 696.292 kb on - strand, within HP15_677 at 696.311 kb on - strand, within HP15_677 at 696.322 kb on - strand, within HP15_677 at 696.412 kb on - strand, within HP15_677 at 696.419 kb on - strand, within HP15_677 at 696.501 kb on + strand at 696.520 kb on - strand at 696.549 kb on + strand at 696.549 kb on + strand at 696.557 kb on - strand at 696.635 kb on + strand, within HP15_678 at 696.641 kb on - strand, within HP15_678 at 696.641 kb on - strand, within HP15_678 at 696.641 kb on - strand, within HP15_678 at 696.736 kb on - strand, within HP15_678 at 696.784 kb on + strand, within HP15_678 at 696.789 kb on + strand, within HP15_678 at 696.789 kb on + strand, within HP15_678 at 696.789 kb on + strand, within HP15_678 at 696.797 kb on - strand, within HP15_678 at 696.914 kb on + strand, within HP15_678 at 696.935 kb on + strand, within HP15_678 at 696.994 kb on + strand, within HP15_678 at 697.021 kb on - strand, within HP15_678 at 697.022 kb on + strand, within HP15_678 at 697.084 kb on + strand at 697.092 kb on - strand at 697.167 kb on - strand, within HP15_679 at 697.245 kb on + strand, within HP15_679 at 697.253 kb on - strand, within HP15_679 at 697.351 kb on - strand at 697.391 kb on + strand at 697.670 kb on + strand at 697.747 kb on - strand at 697.793 kb on - strand at 697.808 kb on - strand, within HP15_681 at 697.844 kb on - strand, within HP15_681 at 697.919 kb on + strand, within HP15_681 at 697.934 kb on - strand, within HP15_681 at 697.955 kb on - strand, within HP15_681 at 697.969 kb on - strand, within HP15_681
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 5 remove 695,571 - HP15_675 0.69 -1.5 695,603 + HP15_675 0.77 -2.5 695,609 + HP15_675 0.78 +0.6 695,617 - HP15_675 0.80 -1.5 695,659 - HP15_675 0.90 +2.4 695,710 + +1.1 695,766 - HP15_676 0.12 -0.4 695,801 + HP15_676 0.20 +0.1 695,860 + HP15_676 0.34 -0.8 695,860 + HP15_676 0.34 -0.3 695,914 - HP15_676 0.47 +0.9 695,957 + HP15_676 0.57 -0.8 695,957 - HP15_676 0.57 +0.5 696,085 + HP15_676 0.87 -0.6 696,092 + HP15_676 0.88 +0.2 696,235 + HP15_677 0.29 +0.1 696,292 - HP15_677 0.48 -3.8 696,311 - HP15_677 0.54 -0.2 696,322 - HP15_677 0.58 -3.2 696,412 - HP15_677 0.87 -1.9 696,419 - HP15_677 0.89 +0.6 696,501 + -0.1 696,520 - +1.3 696,549 + -0.9 696,549 + +0.7 696,557 - -2.8 696,635 + HP15_678 0.17 -0.3 696,641 - HP15_678 0.18 -1.8 696,641 - HP15_678 0.18 -0.9 696,641 - HP15_678 0.18 +0.2 696,736 - HP15_678 0.36 -3.1 696,784 + HP15_678 0.45 -3.3 696,789 + HP15_678 0.46 -0.1 696,789 + HP15_678 0.46 +0.0 696,789 + HP15_678 0.46 -0.4 696,797 - HP15_678 0.47 -0.6 696,914 + HP15_678 0.69 +0.0 696,935 + HP15_678 0.73 -0.5 696,994 + HP15_678 0.84 +0.3 697,021 - HP15_678 0.89 -0.8 697,022 + HP15_678 0.90 -0.4 697,084 + +1.1 697,092 - +0.4 697,167 - HP15_679 0.31 +0.3 697,245 + HP15_679 0.61 +2.7 697,253 - HP15_679 0.64 -0.8 697,351 - -2.0 697,391 + -0.2 697,670 + -0.3 697,747 - -0.4 697,793 - -0.8 697,808 - HP15_681 0.12 -1.6 697,844 - HP15_681 0.17 -0.9 697,919 + HP15_681 0.28 +2.0 697,934 - HP15_681 0.30 -2.2 697,955 - HP15_681 0.33 -1.3 697,969 - HP15_681 0.36 -1.1
Or see this region's nucleotide sequence