Experiment: monoculture; Experiment C, time point 5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_666 and HP15_667 overlap by 25 nucleotides HP15_667 and HP15_668 are separated by 1 nucleotides HP15_668 and HP15_669 overlap by 1 nucleotides HP15_669 and HP15_670 are separated by 74 nucleotides
HP15_666: HP15_666 - conserved hypothetical protein, at 686,724 to 687,284
_666
HP15_667: HP15_667 - prophage LambdaW5, minor tail protein Z-like protein, at 687,260 to 687,802
_667
HP15_668: HP15_668 - conserved hypothetical protein, at 687,804 to 688,115
_668
HP15_669: HP15_669 - protein containing Rho termination factor, N-terminal domain, at 688,115 to 688,414
_669
HP15_670: HP15_670 - peptidase U35, phage prohead, at 688,489 to 690,591
_670
Position (kb) 687
688
689 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 686.809 kb on - strand, within HP15_666 at 686.839 kb on + strand, within HP15_666 at 686.872 kb on + strand, within HP15_666 at 686.872 kb on + strand, within HP15_666 at 686.880 kb on - strand, within HP15_666 at 686.903 kb on - strand, within HP15_666 at 686.912 kb on - strand, within HP15_666 at 686.949 kb on - strand, within HP15_666 at 687.036 kb on - strand, within HP15_666 at 687.140 kb on + strand, within HP15_666 at 687.213 kb on - strand, within HP15_666 at 687.284 kb on + strand at 687.354 kb on + strand, within HP15_667 at 687.354 kb on + strand, within HP15_667 at 687.425 kb on + strand, within HP15_667 at 687.425 kb on + strand, within HP15_667 at 687.433 kb on + strand, within HP15_667 at 687.433 kb on - strand, within HP15_667 at 687.433 kb on - strand, within HP15_667 at 687.455 kb on - strand, within HP15_667 at 687.512 kb on - strand, within HP15_667 at 687.519 kb on + strand, within HP15_667 at 687.526 kb on + strand, within HP15_667 at 687.529 kb on - strand, within HP15_667 at 687.544 kb on + strand, within HP15_667 at 687.552 kb on - strand, within HP15_667 at 687.782 kb on - strand at 687.848 kb on + strand, within HP15_668 at 687.867 kb on + strand, within HP15_668 at 687.875 kb on - strand, within HP15_668 at 687.997 kb on - strand, within HP15_668 at 688.048 kb on + strand, within HP15_668 at 688.057 kb on - strand, within HP15_668 at 688.164 kb on - strand, within HP15_669 at 688.196 kb on + strand, within HP15_669 at 688.267 kb on - strand, within HP15_669 at 688.278 kb on + strand, within HP15_669 at 688.325 kb on - strand, within HP15_669 at 688.329 kb on - strand, within HP15_669 at 688.338 kb on + strand, within HP15_669 at 688.461 kb on + strand at 688.469 kb on - strand at 688.608 kb on + strand at 688.608 kb on + strand at 688.608 kb on + strand at 688.608 kb on + strand at 688.608 kb on + strand at 688.616 kb on - strand at 688.616 kb on - strand at 688.689 kb on + strand at 688.766 kb on + strand, within HP15_670 at 688.766 kb on + strand, within HP15_670 at 688.766 kb on + strand, within HP15_670 at 688.799 kb on + strand, within HP15_670 at 688.878 kb on - strand, within HP15_670 at 689.024 kb on - strand, within HP15_670 at 689.088 kb on + strand, within HP15_670 at 689.098 kb on + strand, within HP15_670
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 5 remove 686,809 - HP15_666 0.15 +0.6 686,839 + HP15_666 0.20 -0.5 686,872 + HP15_666 0.26 +1.8 686,872 + HP15_666 0.26 +0.0 686,880 - HP15_666 0.28 +1.4 686,903 - HP15_666 0.32 -1.0 686,912 - HP15_666 0.34 +0.3 686,949 - HP15_666 0.40 -0.7 687,036 - HP15_666 0.56 +0.4 687,140 + HP15_666 0.74 -0.6 687,213 - HP15_666 0.87 -0.3 687,284 + -0.5 687,354 + HP15_667 0.17 -1.0 687,354 + HP15_667 0.17 -0.6 687,425 + HP15_667 0.30 +1.4 687,425 + HP15_667 0.30 -0.8 687,433 + HP15_667 0.32 -2.3 687,433 - HP15_667 0.32 +1.2 687,433 - HP15_667 0.32 -2.4 687,455 - HP15_667 0.36 +0.2 687,512 - HP15_667 0.46 -1.3 687,519 + HP15_667 0.48 +0.9 687,526 + HP15_667 0.49 -0.1 687,529 - HP15_667 0.50 -1.4 687,544 + HP15_667 0.52 -1.3 687,552 - HP15_667 0.54 -0.3 687,782 - -2.0 687,848 + HP15_668 0.14 -1.2 687,867 + HP15_668 0.20 +0.9 687,875 - HP15_668 0.23 -0.7 687,997 - HP15_668 0.62 -2.4 688,048 + HP15_668 0.78 +0.7 688,057 - HP15_668 0.81 -0.7 688,164 - HP15_669 0.16 -0.6 688,196 + HP15_669 0.27 +1.1 688,267 - HP15_669 0.51 +1.2 688,278 + HP15_669 0.54 -0.6 688,325 - HP15_669 0.70 -0.6 688,329 - HP15_669 0.71 +1.1 688,338 + HP15_669 0.74 +1.2 688,461 + +0.2 688,469 - -0.5 688,608 + -0.8 688,608 + -0.7 688,608 + -0.9 688,608 + -0.2 688,608 + +0.2 688,616 - -0.2 688,616 - -0.7 688,689 + -0.1 688,766 + HP15_670 0.13 +4.1 688,766 + HP15_670 0.13 +0.9 688,766 + HP15_670 0.13 +1.4 688,799 + HP15_670 0.15 +1.2 688,878 - HP15_670 0.18 -0.8 689,024 - HP15_670 0.25 -0.5 689,088 + HP15_670 0.28 +0.2 689,098 + HP15_670 0.29 -0.1
Or see this region's nucleotide sequence