Strain Fitness in Marinobacter adhaerens HP15 around HP15_638

Experiment: monoculture; Experiment C, time point 5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_637 and HP15_638 are separated by 435 nucleotidesHP15_638 and HP15_639 are separated by 48 nucleotides HP15_637: HP15_637 - conserved hypothetical protein, secreted, at 659,143 to 659,658 _637 HP15_638: HP15_638 - integral membrane protein, at 660,094 to 662,580 _638 HP15_639: HP15_639 - methyl-accepting chemotaxis sensory transducer, at 662,629 to 663,849 _639 Position (kb) 660 661 662 663Strain fitness (log2 ratio) -1 0 1 2 3at 659.231 kb on + strand, within HP15_637at 659.231 kb on + strand, within HP15_637at 659.471 kb on - strand, within HP15_637at 659.524 kb on + strand, within HP15_637at 659.551 kb on - strand, within HP15_637at 659.661 kb on - strandat 659.692 kb on - strandat 659.757 kb on - strandat 659.765 kb on - strandat 659.845 kb on + strandat 659.955 kb on + strandat 659.955 kb on + strandat 659.962 kb on - strandat 659.963 kb on - strandat 659.963 kb on - strandat 659.963 kb on - strandat 659.963 kb on - strandat 660.038 kb on + strandat 660.038 kb on + strandat 660.038 kb on + strandat 660.046 kb on - strandat 660.046 kb on - strandat 660.046 kb on - strandat 660.046 kb on - strandat 660.046 kb on - strandat 660.058 kb on + strandat 660.091 kb on + strandat 660.093 kb on + strandat 660.113 kb on + strandat 660.172 kb on - strandat 660.359 kb on - strand, within HP15_638at 660.434 kb on - strand, within HP15_638at 660.448 kb on - strand, within HP15_638at 660.759 kb on - strand, within HP15_638at 660.783 kb on + strand, within HP15_638at 660.783 kb on + strand, within HP15_638at 660.916 kb on - strand, within HP15_638at 660.939 kb on - strand, within HP15_638at 660.978 kb on - strand, within HP15_638at 661.219 kb on - strand, within HP15_638at 661.238 kb on - strand, within HP15_638at 661.238 kb on - strand, within HP15_638at 661.240 kb on + strand, within HP15_638at 661.245 kb on + strand, within HP15_638at 661.248 kb on - strand, within HP15_638at 661.263 kb on + strand, within HP15_638at 661.273 kb on - strand, within HP15_638at 661.293 kb on + strand, within HP15_638at 661.316 kb on - strand, within HP15_638at 661.319 kb on - strand, within HP15_638at 661.321 kb on + strand, within HP15_638at 661.400 kb on - strand, within HP15_638at 661.428 kb on + strand, within HP15_638at 661.428 kb on + strand, within HP15_638at 661.494 kb on + strand, within HP15_638at 661.514 kb on + strand, within HP15_638at 661.516 kb on + strand, within HP15_638at 661.522 kb on - strand, within HP15_638at 661.610 kb on - strand, within HP15_638at 661.785 kb on + strand, within HP15_638at 661.835 kb on + strand, within HP15_638at 661.861 kb on - strand, within HP15_638at 661.863 kb on - strand, within HP15_638at 661.890 kb on - strand, within HP15_638at 661.968 kb on + strand, within HP15_638at 662.082 kb on + strand, within HP15_638at 662.090 kb on - strand, within HP15_638at 662.159 kb on + strand, within HP15_638at 662.231 kb on + strand, within HP15_638at 662.231 kb on - strand, within HP15_638at 662.286 kb on - strand, within HP15_638at 662.562 kb on - strandat 662.644 kb on - strandat 662.736 kb on - strandat 662.764 kb on - strand, within HP15_639at 662.785 kb on + strand, within HP15_639at 662.785 kb on + strand, within HP15_639at 662.990 kb on - strand, within HP15_639at 663.108 kb on + strand, within HP15_639at 663.126 kb on - strand, within HP15_639at 663.234 kb on + strand, within HP15_639at 663.295 kb on - strand, within HP15_639at 663.296 kb on + strand, within HP15_639at 663.487 kb on + strand, within HP15_639at 663.487 kb on + strand, within HP15_639at 663.488 kb on - strand, within HP15_639at 663.495 kb on - strand, within HP15_639at 663.555 kb on + strand, within HP15_639at 663.563 kb on - strand, within HP15_639

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 5
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659,231 + HP15_637 0.17 +1.5
659,231 + HP15_637 0.17 -0.0
659,471 - HP15_637 0.64 +0.0
659,524 + HP15_637 0.74 +1.7
659,551 - HP15_637 0.79 +1.6
659,661 - +1.7
659,692 - +0.2
659,757 - -1.6
659,765 - +1.8
659,845 + +1.3
659,955 + +0.3
659,955 + +0.2
659,962 - -1.0
659,963 - +0.1
659,963 - -0.1
659,963 - +0.4
659,963 - +1.2
660,038 + -0.1
660,038 + +0.2
660,038 + -0.8
660,046 - -0.3
660,046 - -0.2
660,046 - +0.0
660,046 - -0.3
660,046 - -0.9
660,058 + +0.3
660,091 + -0.1
660,093 + +0.4
660,113 + +0.1
660,172 - -0.1
660,359 - HP15_638 0.11 -0.3
660,434 - HP15_638 0.14 -0.2
660,448 - HP15_638 0.14 +0.2
660,759 - HP15_638 0.27 +3.1
660,783 + HP15_638 0.28 +1.4
660,783 + HP15_638 0.28 -1.7
660,916 - HP15_638 0.33 +0.1
660,939 - HP15_638 0.34 +1.6
660,978 - HP15_638 0.36 -1.2
661,219 - HP15_638 0.45 +1.1
661,238 - HP15_638 0.46 +0.2
661,238 - HP15_638 0.46 +0.3
661,240 + HP15_638 0.46 -0.8
661,245 + HP15_638 0.46 +1.2
661,248 - HP15_638 0.46 +1.6
661,263 + HP15_638 0.47 +1.2
661,273 - HP15_638 0.47 +0.0
661,293 + HP15_638 0.48 +0.4
661,316 - HP15_638 0.49 +2.7
661,319 - HP15_638 0.49 +0.4
661,321 + HP15_638 0.49 +0.1
661,400 - HP15_638 0.53 +0.1
661,428 + HP15_638 0.54 -1.2
661,428 + HP15_638 0.54 +0.3
661,494 + HP15_638 0.56 -0.4
661,514 + HP15_638 0.57 +1.7
661,516 + HP15_638 0.57 -0.9
661,522 - HP15_638 0.57 +1.3
661,610 - HP15_638 0.61 -0.4
661,785 + HP15_638 0.68 +1.6
661,835 + HP15_638 0.70 -0.7
661,861 - HP15_638 0.71 -0.2
661,863 - HP15_638 0.71 +1.0
661,890 - HP15_638 0.72 +2.2
661,968 + HP15_638 0.75 -0.1
662,082 + HP15_638 0.80 -0.5
662,090 - HP15_638 0.80 -0.3
662,159 + HP15_638 0.83 -0.4
662,231 + HP15_638 0.86 +1.1
662,231 - HP15_638 0.86 -0.9
662,286 - HP15_638 0.88 -1.2
662,562 - -1.3
662,644 - -0.6
662,736 - -0.0
662,764 - HP15_639 0.11 -0.5
662,785 + HP15_639 0.13 -0.5
662,785 + HP15_639 0.13 +0.8
662,990 - HP15_639 0.30 -1.5
663,108 + HP15_639 0.39 -0.2
663,126 - HP15_639 0.41 +1.3
663,234 + HP15_639 0.50 +1.0
663,295 - HP15_639 0.55 +1.5
663,296 + HP15_639 0.55 +0.3
663,487 + HP15_639 0.70 +0.0
663,487 + HP15_639 0.70 +0.3
663,488 - HP15_639 0.70 +1.0
663,495 - HP15_639 0.71 +1.5
663,555 + HP15_639 0.76 -0.6
663,563 - HP15_639 0.76 +1.4

Or see this region's nucleotide sequence