Experiment: monoculture; Experiment C, time point 5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_636 and HP15_637 are separated by 191 nucleotides HP15_637 and HP15_638 are separated by 435 nucleotides
HP15_636: HP15_636 - GTP-binding protein, ribosome biogenesis, YlqF, at 658,013 to 658,951
_636
HP15_637: HP15_637 - conserved hypothetical protein, secreted, at 659,143 to 659,658
_637
HP15_638: HP15_638 - integral membrane protein, at 660,094 to 662,580
_638
Position (kb) 659
660 Strain fitness (log2 ratio) -1
0
1
2 at 659.231 kb on + strand, within HP15_637 at 659.231 kb on + strand, within HP15_637 at 659.471 kb on - strand, within HP15_637 at 659.524 kb on + strand, within HP15_637 at 659.551 kb on - strand, within HP15_637 at 659.661 kb on - strand at 659.692 kb on - strand at 659.757 kb on - strand at 659.765 kb on - strand at 659.845 kb on + strand at 659.955 kb on + strand at 659.955 kb on + strand at 659.962 kb on - strand at 659.963 kb on - strand at 659.963 kb on - strand at 659.963 kb on - strand at 659.963 kb on - strand at 660.038 kb on + strand at 660.038 kb on + strand at 660.038 kb on + strand at 660.046 kb on - strand at 660.046 kb on - strand at 660.046 kb on - strand at 660.046 kb on - strand at 660.046 kb on - strand at 660.058 kb on + strand at 660.091 kb on + strand at 660.093 kb on + strand at 660.113 kb on + strand at 660.172 kb on - strand at 660.359 kb on - strand, within HP15_638 at 660.434 kb on - strand, within HP15_638 at 660.448 kb on - strand, within HP15_638
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 5 remove 659,231 + HP15_637 0.17 +1.5 659,231 + HP15_637 0.17 -0.0 659,471 - HP15_637 0.64 +0.0 659,524 + HP15_637 0.74 +1.7 659,551 - HP15_637 0.79 +1.6 659,661 - +1.7 659,692 - +0.2 659,757 - -1.6 659,765 - +1.8 659,845 + +1.3 659,955 + +0.3 659,955 + +0.2 659,962 - -1.0 659,963 - +0.1 659,963 - -0.1 659,963 - +0.4 659,963 - +1.2 660,038 + -0.1 660,038 + +0.2 660,038 + -0.8 660,046 - -0.3 660,046 - -0.2 660,046 - +0.0 660,046 - -0.3 660,046 - -0.9 660,058 + +0.3 660,091 + -0.1 660,093 + +0.4 660,113 + +0.1 660,172 - -0.1 660,359 - HP15_638 0.11 -0.3 660,434 - HP15_638 0.14 -0.2 660,448 - HP15_638 0.14 +0.2
Or see this region's nucleotide sequence