Strain Fitness in Marinobacter adhaerens HP15 around HP15_462

Experiment: monoculture; Experiment C, time point 5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_461 and HP15_462 are separated by 482 nucleotidesHP15_462 and HP15_463 are separated by 15 nucleotides HP15_461: HP15_461 - Histidinol-phosphatase (EC:3.1.3.15) (from data), at 466,744 to 467,400 _461 HP15_462: HP15_462 - dinucleoside polyphosphate hydrolase, at 467,883 to 468,104 _462 HP15_463: HP15_463 - fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain protein, at 468,120 to 470,426 _463 Position (kb) 467 468 469Strain fitness (log2 ratio) -3 -2 -1 0 1at 467.084 kb on + strand, within HP15_461at 467.448 kb on + strandat 467.456 kb on - strandat 467.572 kb on - strandat 467.590 kb on + strandat 467.598 kb on - strandat 467.992 kb on + strand, within HP15_462at 468.038 kb on + strand, within HP15_462at 468.069 kb on + strand, within HP15_462at 468.139 kb on + strandat 468.245 kb on + strandat 468.328 kb on + strandat 468.331 kb on - strandat 468.336 kb on - strandat 468.523 kb on + strand, within HP15_463at 468.541 kb on - strand, within HP15_463at 468.946 kb on - strand, within HP15_463at 468.955 kb on + strand, within HP15_463at 469.037 kb on - strand, within HP15_463at 469.094 kb on + strand, within HP15_463

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 5
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467,084 + HP15_461 0.52 -3.3
467,448 + -2.1
467,456 - +0.3
467,572 - -2.8
467,590 + +1.2
467,598 - -1.5
467,992 + HP15_462 0.49 -0.6
468,038 + HP15_462 0.70 -1.1
468,069 + HP15_462 0.84 -0.2
468,139 + -0.7
468,245 + -2.1
468,328 + -1.4
468,331 - -3.1
468,336 - -2.7
468,523 + HP15_463 0.17 -1.7
468,541 - HP15_463 0.18 -0.9
468,946 - HP15_463 0.36 -0.1
468,955 + HP15_463 0.36 -1.4
469,037 - HP15_463 0.40 -2.8
469,094 + HP15_463 0.42 -2.5

Or see this region's nucleotide sequence