Experiment: monoculture; Experiment C, time point 5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_p187g99 and HP15_p187g100 are separated by 172 nucleotides HP15_p187g100 and HP15_p187g101 overlap by 4 nucleotides HP15_p187g101 and HP15_p187g102 are separated by 42 nucleotides
HP15_p187g99: HP15_p187g99 - methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor, at 93,034 to 94,338
_p187g99
HP15_p187g100: HP15_p187g100 - RNA polymerase sigma factor, at 94,511 to 95,080
_p187g100
HP15_p187g101: HP15_p187g101 - conserved hypothetical protein, at 95,077 to 95,805
_p187g101
HP15_p187g102: HP15_p187g102 - serine-rich repeat containing protein, at 95,848 to 98,010
_p187g102
Position (kb) 95
96 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 94.120 kb on + strand, within HP15_p187g99 at 94.133 kb on - strand, within HP15_p187g99 at 94.135 kb on - strand, within HP15_p187g99 at 94.135 kb on - strand, within HP15_p187g99 at 94.142 kb on + strand, within HP15_p187g99 at 94.169 kb on - strand, within HP15_p187g99 at 94.171 kb on - strand, within HP15_p187g99 at 94.174 kb on + strand, within HP15_p187g99 at 94.182 kb on - strand, within HP15_p187g99 at 94.182 kb on - strand, within HP15_p187g99 at 94.231 kb on + strand at 94.239 kb on - strand at 94.245 kb on - strand at 94.247 kb on + strand at 94.317 kb on + strand at 94.325 kb on - strand at 94.325 kb on - strand at 94.325 kb on - strand at 94.365 kb on - strand at 94.416 kb on + strand at 94.456 kb on - strand at 94.497 kb on + strand at 94.558 kb on + strand at 94.559 kb on + strand at 94.582 kb on + strand, within HP15_p187g100 at 94.603 kb on + strand, within HP15_p187g100 at 94.611 kb on - strand, within HP15_p187g100 at 94.656 kb on + strand, within HP15_p187g100 at 94.668 kb on + strand, within HP15_p187g100 at 94.668 kb on + strand, within HP15_p187g100 at 94.668 kb on + strand, within HP15_p187g100 at 94.676 kb on - strand, within HP15_p187g100 at 94.676 kb on - strand, within HP15_p187g100 at 94.717 kb on + strand, within HP15_p187g100 at 94.719 kb on + strand, within HP15_p187g100 at 94.719 kb on + strand, within HP15_p187g100 at 94.719 kb on + strand, within HP15_p187g100 at 94.719 kb on + strand, within HP15_p187g100 at 94.719 kb on + strand, within HP15_p187g100 at 94.727 kb on - strand, within HP15_p187g100 at 94.727 kb on - strand, within HP15_p187g100 at 94.753 kb on + strand, within HP15_p187g100 at 94.769 kb on - strand, within HP15_p187g100 at 94.784 kb on + strand, within HP15_p187g100 at 94.792 kb on - strand, within HP15_p187g100 at 94.835 kb on + strand, within HP15_p187g100 at 94.841 kb on + strand, within HP15_p187g100 at 94.849 kb on - strand, within HP15_p187g100 at 94.863 kb on - strand, within HP15_p187g100 at 94.894 kb on - strand, within HP15_p187g100 at 94.934 kb on + strand, within HP15_p187g100 at 94.944 kb on + strand, within HP15_p187g100 at 94.975 kb on + strand, within HP15_p187g100 at 94.983 kb on + strand, within HP15_p187g100 at 94.983 kb on + strand, within HP15_p187g100 at 94.991 kb on - strand, within HP15_p187g100 at 94.991 kb on - strand, within HP15_p187g100 at 94.991 kb on - strand, within HP15_p187g100 at 94.991 kb on - strand, within HP15_p187g100 at 94.991 kb on - strand, within HP15_p187g100 at 94.991 kb on - strand, within HP15_p187g100 at 94.991 kb on - strand, within HP15_p187g100 at 95.015 kb on + strand, within HP15_p187g100 at 95.020 kb on + strand, within HP15_p187g100 at 95.049 kb on + strand at 95.057 kb on - strand at 95.057 kb on - strand at 95.057 kb on - strand at 95.115 kb on + strand at 95.116 kb on + strand at 95.121 kb on + strand at 95.121 kb on + strand at 95.129 kb on + strand at 95.140 kb on + strand at 95.142 kb on + strand at 95.148 kb on - strand at 95.148 kb on - strand at 95.150 kb on - strand, within HP15_p187g101 at 95.186 kb on + strand, within HP15_p187g101 at 95.236 kb on + strand, within HP15_p187g101 at 95.246 kb on + strand, within HP15_p187g101 at 95.277 kb on - strand, within HP15_p187g101 at 95.317 kb on + strand, within HP15_p187g101 at 95.334 kb on - strand, within HP15_p187g101 at 95.334 kb on - strand, within HP15_p187g101 at 95.363 kb on - strand, within HP15_p187g101 at 95.382 kb on + strand, within HP15_p187g101 at 95.436 kb on - strand, within HP15_p187g101 at 95.492 kb on + strand, within HP15_p187g101 at 95.501 kb on - strand, within HP15_p187g101 at 95.512 kb on + strand, within HP15_p187g101 at 95.586 kb on - strand, within HP15_p187g101 at 95.691 kb on - strand, within HP15_p187g101 at 95.691 kb on - strand, within HP15_p187g101 at 95.693 kb on + strand, within HP15_p187g101 at 95.693 kb on + strand, within HP15_p187g101 at 95.693 kb on + strand, within HP15_p187g101 at 95.693 kb on + strand, within HP15_p187g101 at 95.701 kb on - strand, within HP15_p187g101 at 95.731 kb on - strand, within HP15_p187g101 at 95.793 kb on - strand at 95.865 kb on + strand at 95.873 kb on - strand at 95.873 kb on - strand at 95.916 kb on + strand at 95.958 kb on - strand at 95.965 kb on + strand at 96.013 kb on + strand at 96.042 kb on - strand at 96.047 kb on + strand at 96.067 kb on + strand, within HP15_p187g102 at 96.076 kb on - strand, within HP15_p187g102 at 96.077 kb on + strand, within HP15_p187g102 at 96.112 kb on - strand, within HP15_p187g102 at 96.122 kb on - strand, within HP15_p187g102 at 96.122 kb on - strand, within HP15_p187g102 at 96.152 kb on + strand, within HP15_p187g102 at 96.152 kb on + strand, within HP15_p187g102 at 96.152 kb on + strand, within HP15_p187g102 at 96.159 kb on + strand, within HP15_p187g102 at 96.160 kb on - strand, within HP15_p187g102 at 96.160 kb on - strand, within HP15_p187g102 at 96.187 kb on - strand, within HP15_p187g102 at 96.316 kb on + strand, within HP15_p187g102 at 96.316 kb on + strand, within HP15_p187g102 at 96.321 kb on + strand, within HP15_p187g102 at 96.329 kb on - strand, within HP15_p187g102 at 96.331 kb on - strand, within HP15_p187g102 at 96.333 kb on + strand, within HP15_p187g102 at 96.361 kb on + strand, within HP15_p187g102 at 96.369 kb on + strand, within HP15_p187g102 at 96.385 kb on - strand, within HP15_p187g102 at 96.412 kb on - strand, within HP15_p187g102 at 96.419 kb on - strand, within HP15_p187g102 at 96.497 kb on - strand, within HP15_p187g102 at 96.497 kb on - strand, within HP15_p187g102 at 96.503 kb on + strand, within HP15_p187g102 at 96.513 kb on + strand, within HP15_p187g102 at 96.513 kb on + strand, within HP15_p187g102 at 96.521 kb on - strand, within HP15_p187g102 at 96.527 kb on + strand, within HP15_p187g102 at 96.554 kb on - strand, within HP15_p187g102 at 96.625 kb on + strand, within HP15_p187g102 at 96.635 kb on + strand, within HP15_p187g102 at 96.637 kb on + strand, within HP15_p187g102 at 96.643 kb on - strand, within HP15_p187g102 at 96.665 kb on + strand, within HP15_p187g102 at 96.665 kb on + strand, within HP15_p187g102 at 96.670 kb on + strand, within HP15_p187g102 at 96.670 kb on + strand, within HP15_p187g102 at 96.673 kb on - strand, within HP15_p187g102 at 96.673 kb on - strand, within HP15_p187g102 at 96.673 kb on - strand, within HP15_p187g102 at 96.678 kb on - strand, within HP15_p187g102 at 96.710 kb on - strand, within HP15_p187g102 at 96.732 kb on + strand, within HP15_p187g102 at 96.741 kb on + strand, within HP15_p187g102 at 96.758 kb on + strand, within HP15_p187g102 at 96.766 kb on - strand, within HP15_p187g102 at 96.770 kb on + strand, within HP15_p187g102 at 96.777 kb on + strand, within HP15_p187g102 at 96.789 kb on + strand, within HP15_p187g102 at 96.797 kb on - strand, within HP15_p187g102
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 5 remove 94,120 + HP15_p187g99 0.83 -0.7 94,133 - HP15_p187g99 0.84 +0.2 94,135 - HP15_p187g99 0.84 +0.9 94,135 - HP15_p187g99 0.84 +1.0 94,142 + HP15_p187g99 0.85 -0.6 94,169 - HP15_p187g99 0.87 +0.6 94,171 - HP15_p187g99 0.87 +0.4 94,174 + HP15_p187g99 0.87 +1.0 94,182 - HP15_p187g99 0.88 +1.9 94,182 - HP15_p187g99 0.88 +1.5 94,231 + +1.3 94,239 - +0.7 94,245 - -0.2 94,247 + +1.8 94,317 + -0.3 94,325 - +0.1 94,325 - -0.6 94,325 - -0.6 94,365 - +0.5 94,416 + -0.4 94,456 - -0.2 94,497 + -0.4 94,558 + -0.4 94,559 + -0.2 94,582 + HP15_p187g100 0.12 -0.9 94,603 + HP15_p187g100 0.16 +0.2 94,611 - HP15_p187g100 0.18 +1.7 94,656 + HP15_p187g100 0.25 -0.3 94,668 + HP15_p187g100 0.28 -0.6 94,668 + HP15_p187g100 0.28 -1.0 94,668 + HP15_p187g100 0.28 +0.5 94,676 - HP15_p187g100 0.29 -1.1 94,676 - HP15_p187g100 0.29 +1.5 94,717 + HP15_p187g100 0.36 -1.9 94,719 + HP15_p187g100 0.36 -1.8 94,719 + HP15_p187g100 0.36 -0.9 94,719 + HP15_p187g100 0.36 +1.1 94,719 + HP15_p187g100 0.36 -0.0 94,719 + HP15_p187g100 0.36 +1.0 94,727 - HP15_p187g100 0.38 +0.4 94,727 - HP15_p187g100 0.38 -0.6 94,753 + HP15_p187g100 0.42 -0.3 94,769 - HP15_p187g100 0.45 -0.4 94,784 + HP15_p187g100 0.48 +1.6 94,792 - HP15_p187g100 0.49 -2.4 94,835 + HP15_p187g100 0.57 +2.0 94,841 + HP15_p187g100 0.58 +1.4 94,849 - HP15_p187g100 0.59 -2.6 94,863 - HP15_p187g100 0.62 +1.2 94,894 - HP15_p187g100 0.67 -1.3 94,934 + HP15_p187g100 0.74 -0.4 94,944 + HP15_p187g100 0.76 -0.5 94,975 + HP15_p187g100 0.81 -0.9 94,983 + HP15_p187g100 0.83 -2.6 94,983 + HP15_p187g100 0.83 +0.0 94,991 - HP15_p187g100 0.84 -0.4 94,991 - HP15_p187g100 0.84 +1.6 94,991 - HP15_p187g100 0.84 -1.6 94,991 - HP15_p187g100 0.84 -0.9 94,991 - HP15_p187g100 0.84 -0.1 94,991 - HP15_p187g100 0.84 -0.5 94,991 - HP15_p187g100 0.84 +0.8 95,015 + HP15_p187g100 0.88 -0.2 95,020 + HP15_p187g100 0.89 -0.4 95,049 + -1.2 95,057 - -0.9 95,057 - +1.4 95,057 - +0.8 95,115 + +0.5 95,116 + +1.1 95,121 + +1.9 95,121 + +2.8 95,129 + -0.5 95,140 + +2.2 95,142 + -0.9 95,148 - -1.6 95,148 - +2.2 95,150 - HP15_p187g101 0.10 -0.2 95,186 + HP15_p187g101 0.15 -0.3 95,236 + HP15_p187g101 0.22 +1.6 95,246 + HP15_p187g101 0.23 +0.4 95,277 - HP15_p187g101 0.27 +1.5 95,317 + HP15_p187g101 0.33 -1.2 95,334 - HP15_p187g101 0.35 -1.8 95,334 - HP15_p187g101 0.35 -1.0 95,363 - HP15_p187g101 0.39 +0.7 95,382 + HP15_p187g101 0.42 -1.0 95,436 - HP15_p187g101 0.49 -0.8 95,492 + HP15_p187g101 0.57 +0.6 95,501 - HP15_p187g101 0.58 -0.8 95,512 + HP15_p187g101 0.60 -1.2 95,586 - HP15_p187g101 0.70 -1.6 95,691 - HP15_p187g101 0.84 +0.7 95,691 - HP15_p187g101 0.84 -2.3 95,693 + HP15_p187g101 0.84 -1.6 95,693 + HP15_p187g101 0.84 -3.4 95,693 + HP15_p187g101 0.84 +1.6 95,693 + HP15_p187g101 0.84 +0.6 95,701 - HP15_p187g101 0.86 +0.2 95,731 - HP15_p187g101 0.90 +0.2 95,793 - +0.7 95,865 + -0.2 95,873 - -0.1 95,873 - +0.1 95,916 + +0.8 95,958 - -1.6 95,965 + +0.7 96,013 + +1.1 96,042 - -3.3 96,047 + -2.1 96,067 + HP15_p187g102 0.10 +1.3 96,076 - HP15_p187g102 0.11 -0.4 96,077 + HP15_p187g102 0.11 +0.9 96,112 - HP15_p187g102 0.12 -0.9 96,122 - HP15_p187g102 0.13 +0.2 96,122 - HP15_p187g102 0.13 +1.3 96,152 + HP15_p187g102 0.14 +1.4 96,152 + HP15_p187g102 0.14 -0.3 96,152 + HP15_p187g102 0.14 -0.7 96,159 + HP15_p187g102 0.14 +1.6 96,160 - HP15_p187g102 0.14 +1.5 96,160 - HP15_p187g102 0.14 -0.6 96,187 - HP15_p187g102 0.16 +1.7 96,316 + HP15_p187g102 0.22 +1.3 96,316 + HP15_p187g102 0.22 -1.9 96,321 + HP15_p187g102 0.22 -0.5 96,329 - HP15_p187g102 0.22 -1.8 96,331 - HP15_p187g102 0.22 +1.6 96,333 + HP15_p187g102 0.22 -0.1 96,361 + HP15_p187g102 0.24 +1.6 96,369 + HP15_p187g102 0.24 -0.6 96,385 - HP15_p187g102 0.25 -2.0 96,412 - HP15_p187g102 0.26 -0.4 96,419 - HP15_p187g102 0.26 +1.2 96,497 - HP15_p187g102 0.30 +1.0 96,497 - HP15_p187g102 0.30 +0.8 96,503 + HP15_p187g102 0.30 +1.2 96,513 + HP15_p187g102 0.31 -0.4 96,513 + HP15_p187g102 0.31 +0.6 96,521 - HP15_p187g102 0.31 +1.2 96,527 + HP15_p187g102 0.31 +0.4 96,554 - HP15_p187g102 0.33 +0.6 96,625 + HP15_p187g102 0.36 -0.4 96,635 + HP15_p187g102 0.36 -0.6 96,637 + HP15_p187g102 0.36 -1.6 96,643 - HP15_p187g102 0.37 -0.2 96,665 + HP15_p187g102 0.38 +0.2 96,665 + HP15_p187g102 0.38 +0.2 96,670 + HP15_p187g102 0.38 +0.1 96,670 + HP15_p187g102 0.38 +0.8 96,673 - HP15_p187g102 0.38 +0.2 96,673 - HP15_p187g102 0.38 +1.4 96,673 - HP15_p187g102 0.38 -0.6 96,678 - HP15_p187g102 0.38 +0.4 96,710 - HP15_p187g102 0.40 -0.6 96,732 + HP15_p187g102 0.41 +1.5 96,741 + HP15_p187g102 0.41 -0.1 96,758 + HP15_p187g102 0.42 +1.1 96,766 - HP15_p187g102 0.42 -0.6 96,770 + HP15_p187g102 0.43 +1.7 96,777 + HP15_p187g102 0.43 -0.2 96,789 + HP15_p187g102 0.44 -0.7 96,797 - HP15_p187g102 0.44 -0.4
Or see this region's nucleotide sequence