Experiment: monoculture; Experiment C, time point 5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_p187g39 and HP15_p187g40 are separated by 141 nucleotides HP15_p187g40 and HP15_p187g41 are separated by 259 nucleotides HP15_p187g41 and HP15_p187g42 are separated by 26 nucleotides
HP15_p187g39: HP15_p187g39 - conserved hypothetical protein, secreted, at 32,581 to 33,666
_p187g39
HP15_p187g40: HP15_p187g40 - GGDEF family protein, at 33,808 to 34,683
_p187g40
HP15_p187g41: HP15_p187g41 - hypothetical protein, at 34,943 to 35,161
_p187g41
HP15_p187g42: HP15_p187g42 - glucosamine--fructose-6-phosphate aminotransferase, isomerizing-like protein, at 35,188 to 35,697
_p187g42
Position (kb) 33
34
35 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 32.817 kb on + strand, within HP15_p187g39 at 32.832 kb on - strand, within HP15_p187g39 at 32.847 kb on + strand, within HP15_p187g39 at 32.891 kb on + strand, within HP15_p187g39 at 32.891 kb on - strand, within HP15_p187g39 at 32.899 kb on - strand, within HP15_p187g39 at 32.899 kb on - strand, within HP15_p187g39 at 32.913 kb on + strand, within HP15_p187g39 at 32.913 kb on + strand, within HP15_p187g39 at 32.913 kb on + strand, within HP15_p187g39 at 32.913 kb on + strand, within HP15_p187g39 at 32.915 kb on + strand, within HP15_p187g39 at 32.915 kb on + strand, within HP15_p187g39 at 32.915 kb on + strand, within HP15_p187g39 at 32.921 kb on - strand, within HP15_p187g39 at 32.921 kb on - strand, within HP15_p187g39 at 32.923 kb on - strand, within HP15_p187g39 at 32.923 kb on - strand, within HP15_p187g39 at 33.020 kb on + strand, within HP15_p187g39 at 33.046 kb on - strand, within HP15_p187g39 at 33.054 kb on + strand, within HP15_p187g39 at 33.104 kb on - strand, within HP15_p187g39 at 33.176 kb on + strand, within HP15_p187g39 at 33.190 kb on + strand, within HP15_p187g39 at 33.227 kb on + strand, within HP15_p187g39 at 33.347 kb on - strand, within HP15_p187g39 at 33.369 kb on + strand, within HP15_p187g39 at 33.393 kb on + strand, within HP15_p187g39 at 33.393 kb on + strand, within HP15_p187g39 at 33.393 kb on + strand, within HP15_p187g39 at 33.401 kb on - strand, within HP15_p187g39 at 33.425 kb on + strand, within HP15_p187g39 at 33.451 kb on + strand, within HP15_p187g39 at 33.459 kb on - strand, within HP15_p187g39 at 33.459 kb on - strand, within HP15_p187g39 at 33.459 kb on - strand, within HP15_p187g39 at 33.532 kb on + strand, within HP15_p187g39 at 33.545 kb on - strand, within HP15_p187g39 at 33.546 kb on + strand, within HP15_p187g39 at 33.591 kb on + strand at 33.599 kb on - strand at 33.599 kb on - strand at 33.821 kb on + strand at 33.824 kb on - strand at 33.824 kb on - strand at 33.865 kb on - strand at 33.865 kb on - strand at 33.887 kb on - strand at 33.889 kb on - strand at 33.907 kb on + strand, within HP15_p187g40 at 33.912 kb on + strand, within HP15_p187g40 at 33.915 kb on - strand, within HP15_p187g40 at 33.920 kb on - strand, within HP15_p187g40 at 33.930 kb on + strand, within HP15_p187g40 at 33.931 kb on + strand, within HP15_p187g40 at 33.932 kb on + strand, within HP15_p187g40 at 33.956 kb on + strand, within HP15_p187g40 at 33.964 kb on - strand, within HP15_p187g40 at 33.964 kb on - strand, within HP15_p187g40 at 33.964 kb on - strand, within HP15_p187g40 at 33.966 kb on + strand, within HP15_p187g40 at 33.966 kb on + strand, within HP15_p187g40 at 33.969 kb on - strand, within HP15_p187g40 at 33.974 kb on - strand, within HP15_p187g40 at 33.998 kb on + strand, within HP15_p187g40 at 34.005 kb on + strand, within HP15_p187g40 at 34.013 kb on + strand, within HP15_p187g40 at 34.020 kb on + strand, within HP15_p187g40 at 34.030 kb on + strand, within HP15_p187g40 at 34.067 kb on + strand, within HP15_p187g40 at 34.067 kb on + strand, within HP15_p187g40 at 34.075 kb on + strand, within HP15_p187g40 at 34.075 kb on - strand, within HP15_p187g40 at 34.083 kb on + strand, within HP15_p187g40 at 34.083 kb on - strand, within HP15_p187g40 at 34.086 kb on - strand, within HP15_p187g40 at 34.097 kb on + strand, within HP15_p187g40 at 34.097 kb on + strand, within HP15_p187g40 at 34.097 kb on + strand, within HP15_p187g40 at 34.112 kb on + strand, within HP15_p187g40 at 34.127 kb on + strand, within HP15_p187g40 at 34.131 kb on - strand, within HP15_p187g40 at 34.135 kb on - strand, within HP15_p187g40 at 34.141 kb on + strand, within HP15_p187g40 at 34.147 kb on - strand, within HP15_p187g40 at 34.149 kb on - strand, within HP15_p187g40 at 34.149 kb on - strand, within HP15_p187g40 at 34.174 kb on + strand, within HP15_p187g40 at 34.188 kb on + strand, within HP15_p187g40 at 34.241 kb on + strand, within HP15_p187g40 at 34.272 kb on + strand, within HP15_p187g40 at 34.273 kb on + strand, within HP15_p187g40 at 34.321 kb on + strand, within HP15_p187g40 at 34.321 kb on + strand, within HP15_p187g40 at 34.329 kb on - strand, within HP15_p187g40 at 34.382 kb on - strand, within HP15_p187g40 at 34.421 kb on + strand, within HP15_p187g40 at 34.441 kb on + strand, within HP15_p187g40 at 34.449 kb on - strand, within HP15_p187g40 at 34.449 kb on - strand, within HP15_p187g40 at 34.451 kb on + strand, within HP15_p187g40 at 34.485 kb on - strand, within HP15_p187g40 at 34.512 kb on + strand, within HP15_p187g40 at 34.519 kb on + strand, within HP15_p187g40 at 34.522 kb on + strand, within HP15_p187g40 at 34.525 kb on - strand, within HP15_p187g40 at 34.581 kb on - strand, within HP15_p187g40 at 34.581 kb on - strand, within HP15_p187g40 at 34.585 kb on + strand, within HP15_p187g40 at 34.609 kb on + strand at 34.609 kb on + strand at 34.609 kb on + strand at 34.609 kb on + strand at 34.612 kb on - strand at 34.617 kb on - strand at 34.617 kb on - strand at 34.625 kb on + strand at 34.625 kb on + strand at 34.681 kb on - strand at 34.767 kb on + strand at 34.771 kb on + strand at 34.772 kb on + strand at 34.780 kb on - strand at 34.780 kb on - strand at 34.874 kb on + strand at 34.876 kb on + strand at 34.935 kb on + strand at 34.935 kb on + strand at 34.935 kb on + strand at 34.943 kb on - strand at 34.943 kb on - strand at 34.943 kb on - strand at 34.943 kb on - strand at 34.962 kb on - strand at 34.995 kb on - strand, within HP15_p187g41 at 35.000 kb on + strand, within HP15_p187g41 at 35.008 kb on - strand, within HP15_p187g41 at 35.008 kb on - strand, within HP15_p187g41 at 35.008 kb on - strand, within HP15_p187g41 at 35.032 kb on + strand, within HP15_p187g41 at 35.032 kb on + strand, within HP15_p187g41 at 35.042 kb on - strand, within HP15_p187g41 at 35.064 kb on + strand, within HP15_p187g41 at 35.067 kb on + strand, within HP15_p187g41 at 35.067 kb on + strand, within HP15_p187g41 at 35.070 kb on - strand, within HP15_p187g41 at 35.077 kb on - strand, within HP15_p187g41 at 35.216 kb on + strand at 35.273 kb on + strand, within HP15_p187g42 at 35.273 kb on - strand, within HP15_p187g42 at 35.281 kb on - strand, within HP15_p187g42 at 35.281 kb on - strand, within HP15_p187g42 at 35.281 kb on - strand, within HP15_p187g42 at 35.308 kb on + strand, within HP15_p187g42 at 35.342 kb on - strand, within HP15_p187g42 at 35.344 kb on + strand, within HP15_p187g42 at 35.344 kb on + strand, within HP15_p187g42 at 35.362 kb on - strand, within HP15_p187g42 at 35.362 kb on - strand, within HP15_p187g42 at 35.399 kb on + strand, within HP15_p187g42 at 35.422 kb on - strand, within HP15_p187g42 at 35.450 kb on - strand, within HP15_p187g42 at 35.455 kb on - strand, within HP15_p187g42 at 35.488 kb on + strand, within HP15_p187g42 at 35.496 kb on - strand, within HP15_p187g42 at 35.498 kb on + strand, within HP15_p187g42 at 35.500 kb on + strand, within HP15_p187g42 at 35.506 kb on - strand, within HP15_p187g42 at 35.549 kb on + strand, within HP15_p187g42 at 35.562 kb on + strand, within HP15_p187g42 at 35.574 kb on + strand, within HP15_p187g42 at 35.606 kb on + strand, within HP15_p187g42 at 35.644 kb on + strand, within HP15_p187g42 at 35.651 kb on + strand at 35.658 kb on - strand at 35.659 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 5 remove 32,817 + HP15_p187g39 0.22 -0.3 32,832 - HP15_p187g39 0.23 -0.3 32,847 + HP15_p187g39 0.24 -0.3 32,891 + HP15_p187g39 0.29 +0.4 32,891 - HP15_p187g39 0.29 -0.3 32,899 - HP15_p187g39 0.29 +0.3 32,899 - HP15_p187g39 0.29 +0.9 32,913 + HP15_p187g39 0.31 -2.1 32,913 + HP15_p187g39 0.31 -1.2 32,913 + HP15_p187g39 0.31 -0.6 32,913 + HP15_p187g39 0.31 -0.2 32,915 + HP15_p187g39 0.31 +0.1 32,915 + HP15_p187g39 0.31 +0.5 32,915 + HP15_p187g39 0.31 +0.4 32,921 - HP15_p187g39 0.31 +1.4 32,921 - HP15_p187g39 0.31 -0.1 32,923 - HP15_p187g39 0.31 +1.3 32,923 - HP15_p187g39 0.31 -0.5 33,020 + HP15_p187g39 0.40 +0.5 33,046 - HP15_p187g39 0.43 +0.7 33,054 + HP15_p187g39 0.44 +1.1 33,104 - HP15_p187g39 0.48 +1.3 33,176 + HP15_p187g39 0.55 -0.1 33,190 + HP15_p187g39 0.56 -1.0 33,227 + HP15_p187g39 0.59 +0.3 33,347 - HP15_p187g39 0.71 -0.6 33,369 + HP15_p187g39 0.73 -0.3 33,393 + HP15_p187g39 0.75 -0.6 33,393 + HP15_p187g39 0.75 +0.4 33,393 + HP15_p187g39 0.75 +0.4 33,401 - HP15_p187g39 0.76 +1.0 33,425 + HP15_p187g39 0.78 +0.2 33,451 + HP15_p187g39 0.80 +1.9 33,459 - HP15_p187g39 0.81 +1.0 33,459 - HP15_p187g39 0.81 -0.4 33,459 - HP15_p187g39 0.81 -1.0 33,532 + HP15_p187g39 0.88 -0.4 33,545 - HP15_p187g39 0.89 -0.3 33,546 + HP15_p187g39 0.89 +1.3 33,591 + -0.2 33,599 - -0.7 33,599 - -0.1 33,821 + +1.3 33,824 - +1.7 33,824 - -0.1 33,865 - +1.4 33,865 - +0.2 33,887 - -0.3 33,889 - +0.6 33,907 + HP15_p187g40 0.11 +0.1 33,912 + HP15_p187g40 0.12 -0.8 33,915 - HP15_p187g40 0.12 -0.1 33,920 - HP15_p187g40 0.13 -1.1 33,930 + HP15_p187g40 0.14 +1.0 33,931 + HP15_p187g40 0.14 +0.3 33,932 + HP15_p187g40 0.14 -0.4 33,956 + HP15_p187g40 0.17 +1.4 33,964 - HP15_p187g40 0.18 +1.6 33,964 - HP15_p187g40 0.18 +0.7 33,964 - HP15_p187g40 0.18 -0.3 33,966 + HP15_p187g40 0.18 +1.3 33,966 + HP15_p187g40 0.18 -0.8 33,969 - HP15_p187g40 0.18 +0.4 33,974 - HP15_p187g40 0.19 -1.3 33,998 + HP15_p187g40 0.22 +1.4 34,005 + HP15_p187g40 0.22 +0.8 34,013 + HP15_p187g40 0.23 -0.0 34,020 + HP15_p187g40 0.24 -0.1 34,030 + HP15_p187g40 0.25 -0.7 34,067 + HP15_p187g40 0.30 +1.3 34,067 + HP15_p187g40 0.30 -0.5 34,075 + HP15_p187g40 0.30 +1.3 34,075 - HP15_p187g40 0.30 +1.4 34,083 + HP15_p187g40 0.31 +1.3 34,083 - HP15_p187g40 0.31 -0.6 34,086 - HP15_p187g40 0.32 +1.0 34,097 + HP15_p187g40 0.33 -0.7 34,097 + HP15_p187g40 0.33 +0.1 34,097 + HP15_p187g40 0.33 +1.1 34,112 + HP15_p187g40 0.35 +0.7 34,127 + HP15_p187g40 0.36 +0.0 34,131 - HP15_p187g40 0.37 -1.3 34,135 - HP15_p187g40 0.37 +1.5 34,141 + HP15_p187g40 0.38 +0.4 34,147 - HP15_p187g40 0.39 +0.4 34,149 - HP15_p187g40 0.39 -0.3 34,149 - HP15_p187g40 0.39 +1.4 34,174 + HP15_p187g40 0.42 -1.7 34,188 + HP15_p187g40 0.43 -2.1 34,241 + HP15_p187g40 0.49 -0.4 34,272 + HP15_p187g40 0.53 +0.9 34,273 + HP15_p187g40 0.53 +2.2 34,321 + HP15_p187g40 0.59 -0.4 34,321 + HP15_p187g40 0.59 -0.5 34,329 - HP15_p187g40 0.59 -0.3 34,382 - HP15_p187g40 0.66 -1.8 34,421 + HP15_p187g40 0.70 -1.4 34,441 + HP15_p187g40 0.72 +0.1 34,449 - HP15_p187g40 0.73 +1.3 34,449 - HP15_p187g40 0.73 -0.2 34,451 + HP15_p187g40 0.73 +0.8 34,485 - HP15_p187g40 0.77 +1.3 34,512 + HP15_p187g40 0.80 +2.1 34,519 + HP15_p187g40 0.81 +2.0 34,522 + HP15_p187g40 0.82 -1.8 34,525 - HP15_p187g40 0.82 +1.8 34,581 - HP15_p187g40 0.88 -0.3 34,581 - HP15_p187g40 0.88 +0.4 34,585 + HP15_p187g40 0.89 -1.6 34,609 + +0.0 34,609 + +0.2 34,609 + +1.6 34,609 + +1.4 34,612 - +1.4 34,617 - -0.3 34,617 - -1.4 34,625 + +1.4 34,625 + +1.0 34,681 - -0.0 34,767 + -0.2 34,771 + -0.6 34,772 + -0.3 34,780 - -0.4 34,780 - -0.7 34,874 + -1.1 34,876 + -0.0 34,935 + +0.5 34,935 + -0.2 34,935 + -1.0 34,943 - -0.3 34,943 - -1.5 34,943 - -2.2 34,943 - -0.6 34,962 - -1.3 34,995 - HP15_p187g41 0.24 -1.7 35,000 + HP15_p187g41 0.26 -0.7 35,008 - HP15_p187g41 0.30 +0.1 35,008 - HP15_p187g41 0.30 +0.9 35,008 - HP15_p187g41 0.30 +0.5 35,032 + HP15_p187g41 0.41 +0.6 35,032 + HP15_p187g41 0.41 -0.9 35,042 - HP15_p187g41 0.45 -1.6 35,064 + HP15_p187g41 0.55 +0.8 35,067 + HP15_p187g41 0.57 -0.2 35,067 + HP15_p187g41 0.57 +0.2 35,070 - HP15_p187g41 0.58 -0.7 35,077 - HP15_p187g41 0.61 -1.9 35,216 + +0.9 35,273 + HP15_p187g42 0.17 +2.8 35,273 - HP15_p187g42 0.17 +0.9 35,281 - HP15_p187g42 0.18 -0.8 35,281 - HP15_p187g42 0.18 -0.2 35,281 - HP15_p187g42 0.18 -1.8 35,308 + HP15_p187g42 0.24 +1.6 35,342 - HP15_p187g42 0.30 -0.6 35,344 + HP15_p187g42 0.31 +1.7 35,344 + HP15_p187g42 0.31 +1.5 35,362 - HP15_p187g42 0.34 -0.7 35,362 - HP15_p187g42 0.34 -1.2 35,399 + HP15_p187g42 0.41 -0.3 35,422 - HP15_p187g42 0.46 -2.6 35,450 - HP15_p187g42 0.51 -0.6 35,455 - HP15_p187g42 0.52 -1.2 35,488 + HP15_p187g42 0.59 +0.9 35,496 - HP15_p187g42 0.60 +1.8 35,498 + HP15_p187g42 0.61 -0.2 35,500 + HP15_p187g42 0.61 -0.6 35,506 - HP15_p187g42 0.62 -0.4 35,549 + HP15_p187g42 0.71 +1.1 35,562 + HP15_p187g42 0.73 -0.5 35,574 + HP15_p187g42 0.76 -1.1 35,606 + HP15_p187g42 0.82 -1.8 35,644 + HP15_p187g42 0.89 +0.9 35,651 + +1.8 35,658 - -0.3 35,659 - -0.1
Or see this region's nucleotide sequence