Strain Fitness in Marinobacter adhaerens HP15 around HP15_p187g36

Experiment: monoculture; Experiment C, time point 5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_p187g35 and HP15_p187g36 are separated by 104 nucleotidesHP15_p187g36 and HP15_p187g37 are separated by 44 nucleotides HP15_p187g35: HP15_p187g35 - hypothetical protein, at 27,944 to 28,771 _p187g35 HP15_p187g36: HP15_p187g36 - hypothetical protein, at 28,876 to 29,406 _p187g36 HP15_p187g37: HP15_p187g37 - integral membrane protein, transporter, at 29,451 to 31,496 _p187g37 Position (kb) 28 29 30Strain fitness (log2 ratio) -2 -1 0 1 2at 27.882 kb on - strandat 27.932 kb on - strandat 27.937 kb on - strandat 28.052 kb on - strand, within HP15_p187g35at 28.052 kb on - strand, within HP15_p187g35at 28.117 kb on - strand, within HP15_p187g35at 28.120 kb on + strand, within HP15_p187g35at 28.151 kb on - strand, within HP15_p187g35at 28.165 kb on + strand, within HP15_p187g35at 28.187 kb on + strand, within HP15_p187g35at 28.187 kb on + strand, within HP15_p187g35at 28.187 kb on + strand, within HP15_p187g35at 28.187 kb on + strand, within HP15_p187g35at 28.195 kb on - strand, within HP15_p187g35at 28.195 kb on - strand, within HP15_p187g35at 28.195 kb on - strand, within HP15_p187g35at 28.213 kb on + strand, within HP15_p187g35at 28.245 kb on - strand, within HP15_p187g35at 28.280 kb on + strand, within HP15_p187g35at 28.438 kb on + strand, within HP15_p187g35at 28.442 kb on + strand, within HP15_p187g35at 28.446 kb on - strand, within HP15_p187g35at 28.446 kb on - strand, within HP15_p187g35at 28.446 kb on - strand, within HP15_p187g35at 28.450 kb on - strand, within HP15_p187g35at 28.581 kb on - strand, within HP15_p187g35at 28.623 kb on + strand, within HP15_p187g35at 28.631 kb on - strand, within HP15_p187g35at 28.645 kb on + strand, within HP15_p187g35at 28.693 kb on - strandat 28.693 kb on - strandat 28.766 kb on + strandat 28.766 kb on + strandat 28.766 kb on + strandat 28.766 kb on + strandat 28.766 kb on + strandat 28.774 kb on - strandat 28.774 kb on - strandat 28.774 kb on - strandat 28.793 kb on - strandat 28.858 kb on + strandat 28.873 kb on + strandat 28.881 kb on - strandat 28.943 kb on + strand, within HP15_p187g36at 28.943 kb on + strand, within HP15_p187g36at 28.951 kb on - strand, within HP15_p187g36at 29.014 kb on - strand, within HP15_p187g36at 29.084 kb on + strand, within HP15_p187g36at 29.092 kb on - strand, within HP15_p187g36at 29.094 kb on + strand, within HP15_p187g36at 29.107 kb on + strand, within HP15_p187g36at 29.107 kb on + strand, within HP15_p187g36at 29.108 kb on + strand, within HP15_p187g36at 29.110 kb on - strand, within HP15_p187g36at 29.145 kb on + strand, within HP15_p187g36at 29.153 kb on - strand, within HP15_p187g36at 29.153 kb on - strand, within HP15_p187g36at 29.252 kb on - strand, within HP15_p187g36at 29.271 kb on + strand, within HP15_p187g36at 29.318 kb on + strand, within HP15_p187g36at 29.318 kb on + strand, within HP15_p187g36at 29.326 kb on - strand, within HP15_p187g36at 29.326 kb on - strand, within HP15_p187g36at 29.326 kb on - strand, within HP15_p187g36at 29.388 kb on + strandat 29.448 kb on + strandat 29.448 kb on + strandat 29.456 kb on - strandat 29.461 kb on + strandat 29.469 kb on - strandat 29.487 kb on + strandat 29.512 kb on - strandat 29.662 kb on - strand, within HP15_p187g37at 29.662 kb on - strand, within HP15_p187g37at 29.741 kb on + strand, within HP15_p187g37at 29.817 kb on - strand, within HP15_p187g37at 29.832 kb on - strand, within HP15_p187g37at 29.864 kb on - strand, within HP15_p187g37at 29.913 kb on + strand, within HP15_p187g37at 29.997 kb on - strand, within HP15_p187g37at 30.030 kb on - strand, within HP15_p187g37at 30.039 kb on + strand, within HP15_p187g37at 30.039 kb on + strand, within HP15_p187g37at 30.039 kb on + strand, within HP15_p187g37at 30.047 kb on - strand, within HP15_p187g37at 30.047 kb on - strand, within HP15_p187g37at 30.047 kb on - strand, within HP15_p187g37at 30.047 kb on - strand, within HP15_p187g37at 30.057 kb on - strand, within HP15_p187g37at 30.073 kb on - strand, within HP15_p187g37at 30.085 kb on - strand, within HP15_p187g37at 30.142 kb on - strand, within HP15_p187g37at 30.214 kb on + strand, within HP15_p187g37at 30.288 kb on + strand, within HP15_p187g37at 30.296 kb on - strand, within HP15_p187g37at 30.353 kb on + strand, within HP15_p187g37at 30.361 kb on - strand, within HP15_p187g37

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 5
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27,882 - +1.1
27,932 - +0.0
27,937 - +1.3
28,052 - HP15_p187g35 0.13 -0.0
28,052 - HP15_p187g35 0.13 -1.1
28,117 - HP15_p187g35 0.21 -0.5
28,120 + HP15_p187g35 0.21 +0.1
28,151 - HP15_p187g35 0.25 -0.1
28,165 + HP15_p187g35 0.27 -0.1
28,187 + HP15_p187g35 0.29 +0.8
28,187 + HP15_p187g35 0.29 +0.1
28,187 + HP15_p187g35 0.29 -0.9
28,187 + HP15_p187g35 0.29 -0.1
28,195 - HP15_p187g35 0.30 +0.3
28,195 - HP15_p187g35 0.30 -1.0
28,195 - HP15_p187g35 0.30 +0.6
28,213 + HP15_p187g35 0.32 -2.3
28,245 - HP15_p187g35 0.36 +1.1
28,280 + HP15_p187g35 0.41 -1.6
28,438 + HP15_p187g35 0.60 -0.2
28,442 + HP15_p187g35 0.60 -1.2
28,446 - HP15_p187g35 0.61 +1.0
28,446 - HP15_p187g35 0.61 -1.8
28,446 - HP15_p187g35 0.61 +0.1
28,450 - HP15_p187g35 0.61 +1.2
28,581 - HP15_p187g35 0.77 -1.1
28,623 + HP15_p187g35 0.82 +1.2
28,631 - HP15_p187g35 0.83 -0.3
28,645 + HP15_p187g35 0.85 -1.9
28,693 - +1.3
28,693 - +0.1
28,766 + +1.5
28,766 + -0.8
28,766 + +0.4
28,766 + +0.1
28,766 + +1.6
28,774 - -1.0
28,774 - +1.0
28,774 - +0.8
28,793 - -1.0
28,858 + -1.4
28,873 + +1.0
28,881 - +0.7
28,943 + HP15_p187g36 0.13 +2.1
28,943 + HP15_p187g36 0.13 -0.6
28,951 - HP15_p187g36 0.14 -1.0
29,014 - HP15_p187g36 0.26 -1.1
29,084 + HP15_p187g36 0.39 -1.2
29,092 - HP15_p187g36 0.41 -0.9
29,094 + HP15_p187g36 0.41 -1.1
29,107 + HP15_p187g36 0.44 -0.9
29,107 + HP15_p187g36 0.44 +1.2
29,108 + HP15_p187g36 0.44 -0.1
29,110 - HP15_p187g36 0.44 -0.3
29,145 + HP15_p187g36 0.51 -0.3
29,153 - HP15_p187g36 0.52 +0.1
29,153 - HP15_p187g36 0.52 +0.7
29,252 - HP15_p187g36 0.71 -0.2
29,271 + HP15_p187g36 0.74 -0.2
29,318 + HP15_p187g36 0.83 -0.7
29,318 + HP15_p187g36 0.83 +0.7
29,326 - HP15_p187g36 0.85 -0.5
29,326 - HP15_p187g36 0.85 -0.1
29,326 - HP15_p187g36 0.85 -1.3
29,388 + -1.8
29,448 + -1.5
29,448 + -0.6
29,456 - +1.6
29,461 + -1.3
29,469 - -1.0
29,487 + -0.2
29,512 - -0.2
29,662 - HP15_p187g37 0.10 +1.0
29,662 - HP15_p187g37 0.10 -0.2
29,741 + HP15_p187g37 0.14 +0.8
29,817 - HP15_p187g37 0.18 -0.9
29,832 - HP15_p187g37 0.19 -0.6
29,864 - HP15_p187g37 0.20 -0.0
29,913 + HP15_p187g37 0.23 -0.1
29,997 - HP15_p187g37 0.27 +1.8
30,030 - HP15_p187g37 0.28 +2.2
30,039 + HP15_p187g37 0.29 -1.4
30,039 + HP15_p187g37 0.29 -1.0
30,039 + HP15_p187g37 0.29 +1.2
30,047 - HP15_p187g37 0.29 -0.1
30,047 - HP15_p187g37 0.29 +0.4
30,047 - HP15_p187g37 0.29 +1.2
30,047 - HP15_p187g37 0.29 -0.1
30,057 - HP15_p187g37 0.30 -0.5
30,073 - HP15_p187g37 0.30 +0.1
30,085 - HP15_p187g37 0.31 -1.0
30,142 - HP15_p187g37 0.34 +0.6
30,214 + HP15_p187g37 0.37 -0.7
30,288 + HP15_p187g37 0.41 +0.9
30,296 - HP15_p187g37 0.41 -0.2
30,353 + HP15_p187g37 0.44 +0.2
30,361 - HP15_p187g37 0.44 -0.7

Or see this region's nucleotide sequence