Strain Fitness in Marinobacter adhaerens HP15 around HP15_4103

Experiment: monoculture; Experiment C, time point 5

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_4102 and HP15_4103 are separated by 94 nucleotidesHP15_4103 and HP15_4104 are separated by 40 nucleotidesHP15_4104 and HP15_4105 are separated by 198 nucleotidesHP15_4105 and HP15_4106 are separated by 30 nucleotides HP15_4102: HP15_4102 - conserved hypothetical protein, at 4,336,511 to 4,337,497 _4102 HP15_4103: HP15_4103 - conserved hypothetical protein, at 4,337,592 to 4,338,239 _4103 HP15_4104: HP15_4104 - conserved hypothetical protein, at 4,338,280 to 4,338,672 _4104 HP15_4105: HP15_4105 - hypothetical protein, at 4,338,871 to 4,339,170 _4105 HP15_4106: HP15_4106 - conserved hypothetical protein, secreted, at 4,339,201 to 4,339,587 _4106 Position (kb) 4337 4338 4339Strain fitness (log2 ratio) -1 0 1 2at 4336.619 kb on + strand, within HP15_4102at 4336.655 kb on - strand, within HP15_4102at 4336.675 kb on - strand, within HP15_4102at 4336.781 kb on - strand, within HP15_4102at 4336.870 kb on - strand, within HP15_4102at 4336.886 kb on + strand, within HP15_4102at 4337.023 kb on - strand, within HP15_4102at 4337.055 kb on - strand, within HP15_4102at 4337.071 kb on - strand, within HP15_4102at 4337.110 kb on - strand, within HP15_4102at 4337.113 kb on + strand, within HP15_4102at 4337.138 kb on + strand, within HP15_4102at 4337.222 kb on - strand, within HP15_4102at 4337.310 kb on - strand, within HP15_4102at 4337.315 kb on - strand, within HP15_4102at 4337.315 kb on - strand, within HP15_4102at 4337.391 kb on + strand, within HP15_4102at 4337.406 kb on - strandat 4337.425 kb on - strandat 4337.430 kb on - strandat 4337.546 kb on + strandat 4337.554 kb on - strandat 4337.633 kb on + strandat 4337.651 kb on - strandat 4337.748 kb on + strand, within HP15_4103at 4337.793 kb on + strand, within HP15_4103at 4337.801 kb on - strand, within HP15_4103at 4338.061 kb on + strand, within HP15_4103at 4338.069 kb on - strand, within HP15_4103at 4338.101 kb on + strand, within HP15_4103at 4338.126 kb on - strand, within HP15_4103at 4338.146 kb on - strand, within HP15_4103at 4338.146 kb on - strand, within HP15_4103at 4338.160 kb on + strand, within HP15_4103at 4338.224 kb on - strandat 4338.248 kb on - strandat 4338.258 kb on - strandat 4338.258 kb on - strandat 4338.432 kb on - strand, within HP15_4104at 4338.447 kb on - strand, within HP15_4104at 4338.573 kb on + strand, within HP15_4104at 4338.689 kb on + strandat 4338.833 kb on + strandat 4338.903 kb on + strand, within HP15_4105at 4338.974 kb on - strand, within HP15_4105at 4339.088 kb on + strand, within HP15_4105at 4339.164 kb on + strandat 4339.220 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 5
remove
4,336,619 + HP15_4102 0.11 -0.5
4,336,655 - HP15_4102 0.15 +0.1
4,336,675 - HP15_4102 0.17 +0.5
4,336,781 - HP15_4102 0.27 -1.3
4,336,870 - HP15_4102 0.36 -0.2
4,336,886 + HP15_4102 0.38 +1.4
4,337,023 - HP15_4102 0.52 -0.1
4,337,055 - HP15_4102 0.55 -0.3
4,337,071 - HP15_4102 0.57 -0.3
4,337,110 - HP15_4102 0.61 -0.4
4,337,113 + HP15_4102 0.61 -1.5
4,337,138 + HP15_4102 0.64 +0.5
4,337,222 - HP15_4102 0.72 +1.3
4,337,310 - HP15_4102 0.81 +1.3
4,337,315 - HP15_4102 0.81 -0.3
4,337,315 - HP15_4102 0.81 +0.4
4,337,391 + HP15_4102 0.89 -0.2
4,337,406 - +1.3
4,337,425 - +1.2
4,337,430 - +1.3
4,337,546 + -1.1
4,337,554 - +0.5
4,337,633 + +0.5
4,337,651 - +1.4
4,337,748 + HP15_4103 0.24 +0.3
4,337,793 + HP15_4103 0.31 -0.7
4,337,801 - HP15_4103 0.32 -0.4
4,338,061 + HP15_4103 0.72 -0.9
4,338,069 - HP15_4103 0.74 +1.3
4,338,101 + HP15_4103 0.79 -0.8
4,338,126 - HP15_4103 0.82 -0.1
4,338,146 - HP15_4103 0.85 -0.4
4,338,146 - HP15_4103 0.85 +2.0
4,338,160 + HP15_4103 0.88 -1.2
4,338,224 - -0.8
4,338,248 - +1.5
4,338,258 - -1.6
4,338,258 - -1.0
4,338,432 - HP15_4104 0.39 -0.3
4,338,447 - HP15_4104 0.42 -0.9
4,338,573 + HP15_4104 0.75 +0.5
4,338,689 + +0.8
4,338,833 + +1.4
4,338,903 + HP15_4105 0.11 +1.2
4,338,974 - HP15_4105 0.34 -0.8
4,339,088 + HP15_4105 0.72 -1.2
4,339,164 + -0.4
4,339,220 - -0.2

Or see this region's nucleotide sequence