Experiment: monoculture; Experiment C, time point 5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_4076 and HP15_4077 are separated by 45 nucleotides HP15_4077 and HP15_4078 are separated by 32 nucleotides HP15_4078 and HP15_4079 overlap by 4 nucleotides
HP15_4076: HP15_4076 - TRAP dicarboxylate transporter, DctP subunit, at 4,309,735 to 4,310,859
_4076
HP15_4077: HP15_4077 - conserved hypothetical protein, at 4,310,905 to 4,311,531
_4077
HP15_4078: HP15_4078 - glutathione peroxidase, at 4,311,564 to 4,312,136
_4078
HP15_4079: HP15_4079 - flavin dependent oxidoreductase, at 4,312,133 to 4,313,116
_4079
Position (kb) 4311
4312
4313 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4310.588 kb on + strand, within HP15_4076 at 4310.591 kb on - strand, within HP15_4076 at 4310.698 kb on + strand, within HP15_4076 at 4310.710 kb on + strand, within HP15_4076 at 4310.721 kb on + strand, within HP15_4076 at 4310.876 kb on - strand at 4311.056 kb on + strand, within HP15_4077 at 4311.096 kb on + strand, within HP15_4077 at 4311.101 kb on + strand, within HP15_4077 at 4311.118 kb on + strand, within HP15_4077 at 4311.308 kb on + strand, within HP15_4077 at 4311.445 kb on + strand, within HP15_4077 at 4311.499 kb on + strand at 4311.504 kb on + strand at 4311.504 kb on + strand at 4311.507 kb on - strand at 4311.519 kb on - strand at 4311.641 kb on + strand, within HP15_4078 at 4311.715 kb on + strand, within HP15_4078 at 4311.723 kb on - strand, within HP15_4078 at 4311.723 kb on - strand, within HP15_4078 at 4311.758 kb on + strand, within HP15_4078 at 4311.792 kb on - strand, within HP15_4078 at 4311.803 kb on + strand, within HP15_4078 at 4312.062 kb on + strand, within HP15_4078 at 4312.082 kb on - strand at 4312.272 kb on - strand, within HP15_4079 at 4312.305 kb on - strand, within HP15_4079 at 4312.370 kb on + strand, within HP15_4079 at 4312.493 kb on + strand, within HP15_4079 at 4312.506 kb on - strand, within HP15_4079 at 4312.548 kb on + strand, within HP15_4079 at 4312.559 kb on - strand, within HP15_4079 at 4312.584 kb on + strand, within HP15_4079 at 4312.584 kb on + strand, within HP15_4079 at 4312.584 kb on + strand, within HP15_4079 at 4312.592 kb on - strand, within HP15_4079 at 4312.592 kb on - strand, within HP15_4079 at 4312.635 kb on - strand, within HP15_4079 at 4312.695 kb on + strand, within HP15_4079 at 4312.792 kb on + strand, within HP15_4079 at 4312.816 kb on + strand, within HP15_4079 at 4312.845 kb on - strand, within HP15_4079 at 4312.957 kb on + strand, within HP15_4079 at 4313.015 kb on - strand, within HP15_4079 at 4313.051 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 5 remove 4,310,588 + HP15_4076 0.76 -1.2 4,310,591 - HP15_4076 0.76 +0.1 4,310,698 + HP15_4076 0.86 +1.4 4,310,710 + HP15_4076 0.87 +0.1 4,310,721 + HP15_4076 0.88 +0.4 4,310,876 - +1.2 4,311,056 + HP15_4077 0.24 -3.1 4,311,096 + HP15_4077 0.30 +0.1 4,311,101 + HP15_4077 0.31 -1.5 4,311,118 + HP15_4077 0.34 -0.5 4,311,308 + HP15_4077 0.64 +0.1 4,311,445 + HP15_4077 0.86 +0.7 4,311,499 + +1.9 4,311,504 + -1.4 4,311,504 + -0.4 4,311,507 - -1.3 4,311,519 - -0.4 4,311,641 + HP15_4078 0.13 -1.6 4,311,715 + HP15_4078 0.26 -1.6 4,311,723 - HP15_4078 0.28 +0.8 4,311,723 - HP15_4078 0.28 -1.2 4,311,758 + HP15_4078 0.34 +0.1 4,311,792 - HP15_4078 0.40 -1.0 4,311,803 + HP15_4078 0.42 -1.8 4,312,062 + HP15_4078 0.87 -1.0 4,312,082 - -0.0 4,312,272 - HP15_4079 0.14 -0.4 4,312,305 - HP15_4079 0.17 +1.0 4,312,370 + HP15_4079 0.24 +1.5 4,312,493 + HP15_4079 0.37 +0.6 4,312,506 - HP15_4079 0.38 +0.1 4,312,548 + HP15_4079 0.42 +1.6 4,312,559 - HP15_4079 0.43 +0.1 4,312,584 + HP15_4079 0.46 -2.0 4,312,584 + HP15_4079 0.46 -0.5 4,312,584 + HP15_4079 0.46 +0.7 4,312,592 - HP15_4079 0.47 +1.7 4,312,592 - HP15_4079 0.47 +1.2 4,312,635 - HP15_4079 0.51 +1.6 4,312,695 + HP15_4079 0.57 -0.0 4,312,792 + HP15_4079 0.67 -0.7 4,312,816 + HP15_4079 0.69 -0.1 4,312,845 - HP15_4079 0.72 +1.5 4,312,957 + HP15_4079 0.84 -0.3 4,313,015 - HP15_4079 0.90 -0.5 4,313,051 + +0.9
Or see this region's nucleotide sequence