Experiment: monoculture; Experiment C, time point 5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2864 and HP15_2865 are separated by 449 nucleotides HP15_2865 and HP15_2866 are separated by 229 nucleotides HP15_2866 and HP15_2867 are separated by 278 nucleotides
HP15_2864: HP15_2864 - cis-3-chloroacrylic acid dehalogenase, at 3,002,331 to 3,002,762
_2864
HP15_2865: HP15_2865 - hypothetical protein, at 3,003,212 to 3,003,325
_2865
HP15_2866: HP15_2866 - hypothetical protein, at 3,003,555 to 3,004,622
_2866
HP15_2867: HP15_2867 - HypX, at 3,004,901 to 3,006,841
_2867
Position (kb)
3003
3004
3005 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 3002.589 kb on - strand, within HP15_2864 at 3002.615 kb on + strand, within HP15_2864 at 3002.849 kb on - strand at 3002.874 kb on + strand at 3002.922 kb on + strand at 3002.971 kb on + strand at 3002.979 kb on - strand at 3003.117 kb on + strand at 3003.125 kb on - strand at 3003.230 kb on - strand, within HP15_2865 at 3003.230 kb on - strand, within HP15_2865 at 3003.239 kb on - strand, within HP15_2865 at 3003.411 kb on + strand at 3003.458 kb on - strand at 3003.467 kb on - strand at 3003.470 kb on + strand at 3003.481 kb on + strand at 3003.482 kb on - strand at 3003.599 kb on + strand at 3003.666 kb on - strand, within HP15_2866 at 3003.736 kb on + strand, within HP15_2866 at 3003.746 kb on - strand, within HP15_2866 at 3003.748 kb on + strand, within HP15_2866 at 3003.748 kb on + strand, within HP15_2866 at 3003.810 kb on + strand, within HP15_2866 at 3003.945 kb on - strand, within HP15_2866 at 3003.962 kb on - strand, within HP15_2866 at 3004.124 kb on + strand, within HP15_2866 at 3004.124 kb on + strand, within HP15_2866 at 3004.137 kb on + strand, within HP15_2866 at 3004.147 kb on - strand, within HP15_2866 at 3004.164 kb on + strand, within HP15_2866 at 3004.164 kb on + strand, within HP15_2866 at 3004.174 kb on + strand, within HP15_2866 at 3004.249 kb on - strand, within HP15_2866 at 3004.474 kb on + strand, within HP15_2866 at 3004.482 kb on - strand, within HP15_2866 at 3004.526 kb on - strand at 3004.534 kb on - strand at 3005.078 kb on - strand at 3005.285 kb on + strand, within HP15_2867 at 3005.347 kb on + strand, within HP15_2867 at 3005.355 kb on - strand, within HP15_2867 at 3005.355 kb on - strand, within HP15_2867 at 3005.355 kb on - strand, within HP15_2867 at 3005.355 kb on - strand, within HP15_2867 at 3005.614 kb on + strand, within HP15_2867
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 5 remove 3,002,589 - HP15_2864 0.60 -0.1 3,002,615 + HP15_2864 0.66 +1.7 3,002,849 - +0.7 3,002,874 + +1.7 3,002,922 + -0.2 3,002,971 + -0.2 3,002,979 - -0.7 3,003,117 + -0.2 3,003,125 - +1.2 3,003,230 - HP15_2865 0.16 +1.2 3,003,230 - HP15_2865 0.16 -0.4 3,003,239 - HP15_2865 0.24 +0.3 3,003,411 + -0.5 3,003,458 - +1.0 3,003,467 - +1.1 3,003,470 + -1.0 3,003,481 + -1.1 3,003,482 - +2.5 3,003,599 + -0.3 3,003,666 - HP15_2866 0.10 +1.5 3,003,736 + HP15_2866 0.17 +1.7 3,003,746 - HP15_2866 0.18 -0.5 3,003,748 + HP15_2866 0.18 +1.7 3,003,748 + HP15_2866 0.18 -0.1 3,003,810 + HP15_2866 0.24 -0.7 3,003,945 - HP15_2866 0.37 -1.5 3,003,962 - HP15_2866 0.38 -4.4 3,004,124 + HP15_2866 0.53 -1.9 3,004,124 + HP15_2866 0.53 +0.1 3,004,137 + HP15_2866 0.54 -2.3 3,004,147 - HP15_2866 0.55 -2.3 3,004,164 + HP15_2866 0.57 -0.6 3,004,164 + HP15_2866 0.57 -0.9 3,004,174 + HP15_2866 0.58 +0.6 3,004,249 - HP15_2866 0.65 -1.9 3,004,474 + HP15_2866 0.86 +0.4 3,004,482 - HP15_2866 0.87 -1.8 3,004,526 - +0.8 3,004,534 - -1.9 3,005,078 - +0.5 3,005,285 + HP15_2867 0.20 +3.4 3,005,347 + HP15_2867 0.23 -0.0 3,005,355 - HP15_2867 0.23 +0.7 3,005,355 - HP15_2867 0.23 -0.1 3,005,355 - HP15_2867 0.23 +0.8 3,005,355 - HP15_2867 0.23 +1.0 3,005,614 + HP15_2867 0.37 +0.2
Or see this region's nucleotide sequence