Experiment: monoculture; Experiment C, time point 5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2659 and HP15_2660 overlap by 1 nucleotides HP15_2660 and HP15_2661 overlap by 4 nucleotides HP15_2661 and HP15_2662 are separated by 238 nucleotides
HP15_2659: HP15_2659 - Citrate uptake transporter, large transmembrane component TctA (from data) , at 2,808,744 to 2,810,270
_2659
HP15_2660: HP15_2660 - Citrate uptake transporter, small transmembrane component TctB (from data) , at 2,810,270 to 2,810,716
_2660
HP15_2661: HP15_2661 - Citrate uptake transporter, substrate-binding component TctC (from data) , at 2,810,713 to 2,811,699
_2661
HP15_2662: HP15_2662 - two-component sensor histidine kinase, at 2,811,938 to 2,813,557
_2662
Position (kb)
2810
2811
2812 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2809.843 kb on - strand, within HP15_2659 at 2809.847 kb on + strand, within HP15_2659 at 2810.390 kb on - strand, within HP15_2660 at 2810.416 kb on + strand, within HP15_2660 at 2810.647 kb on - strand, within HP15_2660 at 2810.852 kb on - strand, within HP15_2661 at 2811.042 kb on + strand, within HP15_2661 at 2811.253 kb on + strand, within HP15_2661 at 2811.431 kb on + strand, within HP15_2661 at 2811.525 kb on + strand, within HP15_2661 at 2811.692 kb on + strand at 2811.898 kb on - strand at 2811.991 kb on - strand at 2812.231 kb on - strand, within HP15_2662 at 2812.294 kb on + strand, within HP15_2662 at 2812.416 kb on + strand, within HP15_2662 at 2812.424 kb on - strand, within HP15_2662 at 2812.430 kb on - strand, within HP15_2662 at 2812.438 kb on + strand, within HP15_2662 at 2812.471 kb on - strand, within HP15_2662 at 2812.476 kb on + strand, within HP15_2662 at 2812.505 kb on - strand, within HP15_2662
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 5 remove 2,809,843 - HP15_2659 0.72 -0.0 2,809,847 + HP15_2659 0.72 +1.1 2,810,390 - HP15_2660 0.27 -0.8 2,810,416 + HP15_2660 0.33 +1.1 2,810,647 - HP15_2660 0.84 -0.0 2,810,852 - HP15_2661 0.14 -1.8 2,811,042 + HP15_2661 0.33 -0.1 2,811,253 + HP15_2661 0.55 +1.0 2,811,431 + HP15_2661 0.73 -1.0 2,811,525 + HP15_2661 0.82 -2.9 2,811,692 + -0.2 2,811,898 - -2.9 2,811,991 - -0.6 2,812,231 - HP15_2662 0.18 +0.5 2,812,294 + HP15_2662 0.22 +0.7 2,812,416 + HP15_2662 0.30 -0.4 2,812,424 - HP15_2662 0.30 +1.0 2,812,430 - HP15_2662 0.30 -0.2 2,812,438 + HP15_2662 0.31 +0.8 2,812,471 - HP15_2662 0.33 -3.1 2,812,476 + HP15_2662 0.33 -0.9 2,812,505 - HP15_2662 0.35 -0.9
Or see this region's nucleotide sequence