Strain Fitness in Marinobacter adhaerens HP15 around HP15_2553

Experiment: monoculture; Experiment C, time point 5

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_2551 and HP15_2552 are separated by 3 nucleotidesHP15_2552 and HP15_2553 overlap by 1 nucleotidesHP15_2553 and HP15_2554 are separated by 154 nucleotides HP15_2551: HP15_2551 - ABC-1 domain protein, at 2,697,061 to 2,698,416 _2551 HP15_2552: HP15_2552 - silent information regulator protein Sir2, at 2,698,420 to 2,699,097 _2552 HP15_2553: HP15_2553 - oxidoreductase, FAD-binding protein, at 2,699,097 to 2,700,536 _2553 HP15_2554: HP15_2554 - D-3-phosphoglycerate dehydrogenase-like protein, at 2,700,691 to 2,701,920 _2554 Position (kb) 2699 2700 2701Strain fitness (log2 ratio) -1 0 1at 2698.126 kb on - strand, within HP15_2551at 2698.216 kb on + strand, within HP15_2551at 2698.216 kb on + strand, within HP15_2551at 2698.224 kb on - strand, within HP15_2551at 2698.305 kb on + strandat 2698.362 kb on + strandat 2698.483 kb on - strandat 2698.509 kb on + strand, within HP15_2552at 2698.517 kb on - strand, within HP15_2552at 2698.532 kb on + strand, within HP15_2552at 2698.628 kb on + strand, within HP15_2552at 2698.636 kb on - strand, within HP15_2552at 2698.934 kb on + strand, within HP15_2552at 2698.942 kb on - strand, within HP15_2552at 2699.010 kb on - strand, within HP15_2552at 2699.010 kb on - strand, within HP15_2552at 2699.035 kb on + strandat 2700.523 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 5
remove
2,698,126 - HP15_2551 0.79 -0.3
2,698,216 + HP15_2551 0.85 -1.1
2,698,216 + HP15_2551 0.85 -0.9
2,698,224 - HP15_2551 0.86 -0.4
2,698,305 + -1.4
2,698,362 + +1.4
2,698,483 - +1.3
2,698,509 + HP15_2552 0.13 -0.3
2,698,517 - HP15_2552 0.14 +1.4
2,698,532 + HP15_2552 0.17 +1.1
2,698,628 + HP15_2552 0.31 -1.1
2,698,636 - HP15_2552 0.32 +1.4
2,698,934 + HP15_2552 0.76 -0.0
2,698,942 - HP15_2552 0.77 +0.8
2,699,010 - HP15_2552 0.87 -0.7
2,699,010 - HP15_2552 0.87 +0.3
2,699,035 + -0.6
2,700,523 - -0.4

Or see this region's nucleotide sequence