Experiment: monoculture; Experiment C, time point 5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_18 and HP15_19 are separated by 43 nucleotides HP15_19 and HP15_20 are separated by 490 nucleotides HP15_20 and HP15_21 are separated by 374 nucleotides
HP15_18: HP15_18 - cytochrome P450 monooxygenase, at 20,884 to 22,161
_18
HP15_19: HP15_19 - conserved hypothetical protein, at 22,205 to 22,570
_19
HP15_20: HP15_20 - UspA domain protein-like protein, at 23,061 to 23,333
_20
HP15_21: HP15_21 - dioxygenase DitA oxygenase component large subunit, at 23,708 to 25,102
_21
Position (kb) 23
24 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 22.107 kb on - strand at 22.138 kb on - strand at 22.138 kb on - strand at 22.150 kb on + strand at 22.183 kb on + strand at 22.191 kb on - strand at 22.245 kb on + strand, within HP15_19 at 22.258 kb on + strand, within HP15_19 at 22.266 kb on - strand, within HP15_19 at 22.270 kb on + strand, within HP15_19 at 22.363 kb on - strand, within HP15_19 at 22.379 kb on + strand, within HP15_19 at 22.390 kb on - strand, within HP15_19 at 22.397 kb on - strand, within HP15_19 at 22.400 kb on + strand, within HP15_19 at 22.491 kb on + strand, within HP15_19 at 22.491 kb on + strand, within HP15_19 at 22.494 kb on - strand, within HP15_19 at 22.499 kb on - strand, within HP15_19 at 22.499 kb on - strand, within HP15_19 at 22.499 kb on - strand, within HP15_19 at 22.535 kb on + strand at 22.543 kb on - strand at 22.564 kb on + strand at 22.564 kb on + strand at 22.572 kb on - strand at 22.574 kb on + strand at 22.582 kb on - strand at 22.582 kb on - strand at 22.594 kb on - strand at 22.619 kb on + strand at 22.821 kb on - strand at 22.847 kb on + strand at 22.847 kb on + strand at 22.868 kb on - strand at 22.942 kb on - strand at 22.942 kb on - strand at 23.137 kb on + strand, within HP15_20 at 23.137 kb on - strand, within HP15_20 at 23.145 kb on - strand, within HP15_20 at 23.150 kb on - strand, within HP15_20 at 23.265 kb on + strand, within HP15_20 at 23.414 kb on - strand at 23.440 kb on + strand at 23.448 kb on - strand at 23.488 kb on - strand at 23.520 kb on + strand at 23.530 kb on + strand at 23.724 kb on + strand at 23.726 kb on - strand at 23.742 kb on + strand at 23.766 kb on + strand at 23.805 kb on + strand at 23.813 kb on - strand at 23.823 kb on - strand at 24.034 kb on + strand, within HP15_21 at 24.049 kb on + strand, within HP15_21 at 24.120 kb on - strand, within HP15_21 at 24.143 kb on - strand, within HP15_21 at 24.153 kb on - strand, within HP15_21 at 24.161 kb on + strand, within HP15_21 at 24.169 kb on - strand, within HP15_21 at 24.173 kb on + strand, within HP15_21 at 24.173 kb on + strand, within HP15_21 at 24.173 kb on + strand, within HP15_21 at 24.173 kb on + strand, within HP15_21 at 24.174 kb on - strand, within HP15_21 at 24.181 kb on - strand, within HP15_21 at 24.228 kb on - strand, within HP15_21 at 24.252 kb on + strand, within HP15_21 at 24.260 kb on - strand, within HP15_21 at 24.275 kb on - strand, within HP15_21 at 24.296 kb on + strand, within HP15_21 at 24.296 kb on + strand, within HP15_21 at 24.303 kb on + strand, within HP15_21 at 24.311 kb on - strand, within HP15_21 at 24.311 kb on - strand, within HP15_21
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 5 remove 22,107 - -1.0 22,138 - -0.2 22,138 - +0.1 22,150 + +0.1 22,183 + -0.2 22,191 - +0.7 22,245 + HP15_19 0.11 -0.7 22,258 + HP15_19 0.14 +0.2 22,266 - HP15_19 0.17 +1.6 22,270 + HP15_19 0.18 -0.7 22,363 - HP15_19 0.43 -0.3 22,379 + HP15_19 0.48 +0.2 22,390 - HP15_19 0.51 -0.9 22,397 - HP15_19 0.52 -0.8 22,400 + HP15_19 0.53 -1.0 22,491 + HP15_19 0.78 +1.7 22,491 + HP15_19 0.78 -0.6 22,494 - HP15_19 0.79 -0.6 22,499 - HP15_19 0.80 +0.1 22,499 - HP15_19 0.80 +1.8 22,499 - HP15_19 0.80 -0.2 22,535 + +1.0 22,543 - +3.7 22,564 + -0.2 22,564 + -0.4 22,572 - -0.3 22,574 + -0.2 22,582 - -1.0 22,582 - -0.2 22,594 - +1.2 22,619 + -0.5 22,821 - -0.1 22,847 + +0.9 22,847 + -0.3 22,868 - +1.4 22,942 - -0.8 22,942 - +2.0 23,137 + HP15_20 0.28 -0.4 23,137 - HP15_20 0.28 -1.1 23,145 - HP15_20 0.31 +1.1 23,150 - HP15_20 0.33 -0.6 23,265 + HP15_20 0.75 -0.6 23,414 - +0.6 23,440 + -0.6 23,448 - +1.3 23,488 - +0.0 23,520 + +0.0 23,530 + +0.5 23,724 + +0.1 23,726 - +0.5 23,742 + +1.5 23,766 + -0.4 23,805 + -0.4 23,813 - +1.1 23,823 - -1.6 24,034 + HP15_21 0.23 +0.8 24,049 + HP15_21 0.24 -1.4 24,120 - HP15_21 0.30 +0.3 24,143 - HP15_21 0.31 -0.7 24,153 - HP15_21 0.32 -0.7 24,161 + HP15_21 0.32 -0.2 24,169 - HP15_21 0.33 +1.8 24,173 + HP15_21 0.33 +0.6 24,173 + HP15_21 0.33 -0.3 24,173 + HP15_21 0.33 +0.9 24,173 + HP15_21 0.33 +0.5 24,174 - HP15_21 0.33 +0.6 24,181 - HP15_21 0.34 -0.6 24,228 - HP15_21 0.37 -0.1 24,252 + HP15_21 0.39 -1.4 24,260 - HP15_21 0.40 +0.6 24,275 - HP15_21 0.41 -0.3 24,296 + HP15_21 0.42 +0.8 24,296 + HP15_21 0.42 -0.5 24,303 + HP15_21 0.43 -0.6 24,311 - HP15_21 0.43 +1.4 24,311 - HP15_21 0.43 -2.6
Or see this region's nucleotide sequence