Experiment: monoculture; Experiment C, time point 5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1909 and HP15_1910 are separated by 455 nucleotides HP15_1910 and HP15_1911 are separated by 39 nucleotides
HP15_1909: HP15_1909 - fibronectin, type III domain protein-like protein, at 2,020,093 to 2,021,283
_1909
HP15_1910: HP15_1910 - TPR/glycosyl transferase domain protein, at 2,021,739 to 2,023,139
_1910
HP15_1911: HP15_1911 - beta 1,4-N-acetylgalactosaminyltransferase-transferase-III-like protein, at 2,023,179 to 2,025,203
_1911
Position (kb)
2021
2022
2023
2024 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2020.828 kb on - strand, within HP15_1909 at 2021.037 kb on + strand, within HP15_1909 at 2021.329 kb on + strand at 2021.420 kb on + strand at 2021.428 kb on - strand at 2021.491 kb on - strand at 2021.560 kb on - strand at 2021.595 kb on - strand at 2021.772 kb on + strand at 2021.950 kb on - strand, within HP15_1910 at 2022.069 kb on - strand, within HP15_1910 at 2022.163 kb on + strand, within HP15_1910 at 2022.273 kb on - strand, within HP15_1910 at 2022.405 kb on - strand, within HP15_1910 at 2022.437 kb on + strand, within HP15_1910 at 2022.440 kb on - strand, within HP15_1910 at 2022.447 kb on + strand, within HP15_1910 at 2022.652 kb on - strand, within HP15_1910 at 2022.764 kb on - strand, within HP15_1910 at 2022.859 kb on + strand at 2022.941 kb on - strand, within HP15_1910 at 2022.979 kb on + strand, within HP15_1910 at 2023.100 kb on - strand at 2023.133 kb on + strand at 2023.188 kb on + strand at 2023.269 kb on + strand at 2023.306 kb on - strand at 2023.408 kb on - strand, within HP15_1911 at 2023.415 kb on + strand, within HP15_1911 at 2023.415 kb on + strand, within HP15_1911 at 2023.556 kb on + strand, within HP15_1911 at 2023.575 kb on - strand, within HP15_1911 at 2023.610 kb on - strand, within HP15_1911 at 2023.642 kb on - strand, within HP15_1911 at 2023.776 kb on - strand, within HP15_1911 at 2023.845 kb on - strand, within HP15_1911 at 2023.872 kb on + strand, within HP15_1911 at 2023.872 kb on + strand, within HP15_1911 at 2023.872 kb on + strand, within HP15_1911 at 2023.872 kb on + strand, within HP15_1911 at 2023.872 kb on + strand, within HP15_1911 at 2023.880 kb on - strand, within HP15_1911 at 2023.880 kb on - strand, within HP15_1911 at 2023.880 kb on - strand, within HP15_1911 at 2023.880 kb on - strand, within HP15_1911 at 2024.036 kb on - strand, within HP15_1911 at 2024.128 kb on + strand, within HP15_1911
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 5 remove 2,020,828 - HP15_1909 0.62 +0.5 2,021,037 + HP15_1909 0.79 +0.6 2,021,329 + -2.2 2,021,420 + -2.3 2,021,428 - -0.8 2,021,491 - -0.8 2,021,560 - +1.1 2,021,595 - +1.5 2,021,772 + +1.6 2,021,950 - HP15_1910 0.15 +1.9 2,022,069 - HP15_1910 0.24 -0.2 2,022,163 + HP15_1910 0.30 +1.1 2,022,273 - HP15_1910 0.38 +0.1 2,022,405 - HP15_1910 0.48 +1.6 2,022,437 + HP15_1910 0.50 +0.1 2,022,440 - HP15_1910 0.50 +1.5 2,022,447 + HP15_1910 0.51 +0.9 2,022,652 - HP15_1910 0.65 +1.5 2,022,764 - HP15_1910 0.73 +0.2 2,022,859 + -0.2 2,022,941 - HP15_1910 0.86 -0.6 2,022,979 + HP15_1910 0.89 -1.2 2,023,100 - +0.7 2,023,133 + +0.0 2,023,188 + +0.8 2,023,269 + -0.2 2,023,306 - -0.1 2,023,408 - HP15_1911 0.11 -0.4 2,023,415 + HP15_1911 0.12 -1.1 2,023,415 + HP15_1911 0.12 +1.2 2,023,556 + HP15_1911 0.19 -0.1 2,023,575 - HP15_1911 0.20 -1.1 2,023,610 - HP15_1911 0.21 -1.7 2,023,642 - HP15_1911 0.23 -1.1 2,023,776 - HP15_1911 0.29 +0.9 2,023,845 - HP15_1911 0.33 +1.1 2,023,872 + HP15_1911 0.34 -0.7 2,023,872 + HP15_1911 0.34 +1.7 2,023,872 + HP15_1911 0.34 +1.1 2,023,872 + HP15_1911 0.34 +0.5 2,023,872 + HP15_1911 0.34 +1.3 2,023,880 - HP15_1911 0.35 -0.1 2,023,880 - HP15_1911 0.35 +0.1 2,023,880 - HP15_1911 0.35 +1.6 2,023,880 - HP15_1911 0.35 +0.3 2,024,036 - HP15_1911 0.42 +0.3 2,024,128 + HP15_1911 0.47 -0.3
Or see this region's nucleotide sequence