Experiment: monoculture; Experiment C, time point 5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1753 and HP15_1754 are separated by 10 nucleotides HP15_1754 and HP15_1755 are separated by 164 nucleotides HP15_1755 and HP15_1756 are separated by 0 nucleotides
HP15_1753: HP15_1753 - conserved hypothetical protein, secreted, at 1,852,369 to 1,852,842
_1753
HP15_1754: HP15_1754 - rRNA (guanine-N1-)-methyltransferase A, predicted, at 1,852,853 to 1,853,638
_1754
HP15_1755: HP15_1755 - electron transfer flavoprotein subunit alpha, at 1,853,803 to 1,854,744
_1755
HP15_1756: HP15_1756 - electron transfer flavoprotein, beta subunit, at 1,854,745 to 1,855,494
_1756
Position (kb)
1853
1854
1855 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1852.815 kb on + strand at 1852.816 kb on + strand at 1852.823 kb on - strand at 1852.824 kb on - strand at 1852.871 kb on + strand at 1852.879 kb on - strand at 1852.907 kb on + strand at 1852.938 kb on - strand, within HP15_1754 at 1852.967 kb on - strand, within HP15_1754 at 1852.993 kb on - strand, within HP15_1754 at 1853.066 kb on + strand, within HP15_1754 at 1853.274 kb on + strand, within HP15_1754 at 1853.579 kb on - strand at 1853.633 kb on + strand at 1853.641 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 5 remove 1,852,815 + +0.6 1,852,816 + -0.5 1,852,823 - -0.3 1,852,824 - +0.2 1,852,871 + +1.4 1,852,879 - -0.3 1,852,907 + +0.7 1,852,938 - HP15_1754 0.11 -2.9 1,852,967 - HP15_1754 0.15 -0.4 1,852,993 - HP15_1754 0.18 +0.2 1,853,066 + HP15_1754 0.27 -0.5 1,853,274 + HP15_1754 0.54 +0.3 1,853,579 - -0.2 1,853,633 + -0.4 1,853,641 - +1.5
Or see this region's nucleotide sequence