Experiment: monoculture; Experiment C, time point 5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1566 and HP15_1567 are separated by 99 nucleotides HP15_1567 and HP15_1568 overlap by 17 nucleotides HP15_1568 and HP15_1569 are separated by 7 nucleotides
HP15_1566: HP15_1566 - conserved hypothetical protein, at 1,646,626 to 1,646,877
_1566
HP15_1567: HP15_1567 - two component transcriptional regulator, LuxR family, at 1,646,977 to 1,647,639
_1567
HP15_1568: HP15_1568 - excinuclease ABC subunit C, at 1,647,623 to 1,649,485
_1568
HP15_1569: HP15_1569 - CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase, at 1,649,493 to 1,650,071
_1569
Position (kb)
1647
1648
1649
1650 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1646.738 kb on + strand, within HP15_1566 at 1646.741 kb on - strand, within HP15_1566 at 1646.757 kb on + strand, within HP15_1566 at 1646.772 kb on + strand, within HP15_1566 at 1646.780 kb on - strand, within HP15_1566 at 1646.780 kb on - strand, within HP15_1566 at 1646.795 kb on - strand, within HP15_1566 at 1646.800 kb on - strand, within HP15_1566 at 1646.877 kb on + strand at 1646.895 kb on + strand at 1646.982 kb on - strand at 1647.010 kb on - strand at 1647.498 kb on - strand, within HP15_1567 at 1647.498 kb on - strand, within HP15_1567 at 1647.509 kb on + strand, within HP15_1567 at 1647.952 kb on + strand, within HP15_1568 at 1647.995 kb on + strand, within HP15_1568 at 1648.168 kb on + strand, within HP15_1568 at 1648.540 kb on + strand, within HP15_1568 at 1648.600 kb on + strand, within HP15_1568 at 1648.637 kb on + strand, within HP15_1568 at 1649.152 kb on - strand, within HP15_1568 at 1649.395 kb on + strand at 1650.070 kb on + strand at 1650.073 kb on - strand at 1650.120 kb on - strand at 1650.140 kb on + strand at 1650.192 kb on + strand at 1650.199 kb on - strand at 1650.286 kb on + strand at 1650.359 kb on + strand at 1650.373 kb on + strand at 1650.397 kb on - strand at 1650.422 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment C, time point 5 remove 1,646,738 + HP15_1566 0.44 -0.5 1,646,741 - HP15_1566 0.46 +0.7 1,646,757 + HP15_1566 0.52 +0.2 1,646,772 + HP15_1566 0.58 +1.3 1,646,780 - HP15_1566 0.61 +0.8 1,646,780 - HP15_1566 0.61 +1.1 1,646,795 - HP15_1566 0.67 -0.2 1,646,800 - HP15_1566 0.69 -0.5 1,646,877 + +0.2 1,646,895 + +0.8 1,646,982 - +0.5 1,647,010 - +0.7 1,647,498 - HP15_1567 0.79 +0.1 1,647,498 - HP15_1567 0.79 -0.4 1,647,509 + HP15_1567 0.80 +0.3 1,647,952 + HP15_1568 0.18 +0.7 1,647,995 + HP15_1568 0.20 -0.9 1,648,168 + HP15_1568 0.29 -1.6 1,648,540 + HP15_1568 0.49 +0.0 1,648,600 + HP15_1568 0.52 +0.0 1,648,637 + HP15_1568 0.54 -2.6 1,649,152 - HP15_1568 0.82 +0.3 1,649,395 + +0.0 1,650,070 + +1.2 1,650,073 - +1.1 1,650,120 - -0.6 1,650,140 + -0.4 1,650,192 + +1.6 1,650,199 - +1.2 1,650,286 + +1.4 1,650,359 + -0.4 1,650,373 + -0.6 1,650,397 - +1.8 1,650,422 + +1.0
Or see this region's nucleotide sequence